View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16514_low_9 (Length: 439)
Name: NF16514_low_9
Description: NF16514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16514_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Complemental strand, 9108789 - 9108361
Alignment:
| Q |
13 |
agcacagataacgacgaaaaagaaggcaaaaaacttcattgatgatgccattgcaacactatatatagaaacagagaaagttgaaaattaaaacagtgga |
112 |
Q |
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| T |
9108789 |
agcaaagataacgacgaaaaagaaggcaaaaaacttcattgatgatgccattgcaacactatatatagaaacagagaaagttgaaaattaaaacagtgga |
9108690 |
T |
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| Q |
113 |
aaattgtgaatcaagaagaagcaatgcaaagtgtgtatgttgttgaattggtggtgaaagggtgtggaagtatttaactatttataagattgaagggacg |
212 |
Q |
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| T |
9108689 |
aaattgtgaatcaagaagaagcaatgcaaagtgtgtatgttgttgaattggtggtgaaagggtgtggaaatatttaactatttataagattggagggacg |
9108590 |
T |
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| Q |
213 |
cgtggggcccaaaaataacgtggacagcttgagaaacaattatgccgacgttttattatatgaatgggtcagtcgttagatgtttccataggttgtgtgc |
312 |
Q |
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| T |
9108589 |
cgtggggcccaaaaataacgtggacagcttgagaaacaattatgccgacgttttattatatgaatgggtcagtcgttagatgtttccataggttgtgtgc |
9108490 |
T |
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| Q |
313 |
tgttcattattgttaaagttaaacaaccaatgaatatgattggttgtgatatattttcttaactga--agtacgatggtaatagttatttcgatctttga |
410 |
Q |
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| T |
9108489 |
tgttcattattgttaaagttaaacaaccaatgaatatgattggttgtgatatattttcttaagtgaagagtattatggtagtagttatttcgatctttga |
9108390 |
T |
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| Q |
411 |
atttgtaataattagtcacaattaaggac |
439 |
Q |
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| T |
9108389 |
atttgtaataattagtcataattaaggac |
9108361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 8755563 - 8755352
Alignment:
| Q |
26 |
acgaaaaagaaggcaaaaaacttcattgatgatgccattgcaacactatatatagaaacagagaaagttgaaaattaaaacagtggaaaattgtgaatca |
125 |
Q |
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| T |
8755563 |
acgaaaaagaaggcgaaaaacttcattgatgatgccattgcaaaattatatatggaaacagagaaaattgaaaattaaaacagtggaaaattgtgaatca |
8755464 |
T |
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| Q |
126 |
agaagaagcaatgcaaagtgtgtatgttgttga---attggtggtgaaagggtgtggaagtatttaactatttataagattgaagggacgcgtggggccc |
222 |
Q |
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| T |
8755463 |
agaagaagaaatgtaaattatgtatgtttttgaattatttgtggtgaaagtgtgtgggag--------tatttataagattggtgaaacgcgtggggccc |
8755372 |
T |
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| Q |
223 |
aaaaataacgtggacagctt |
242 |
Q |
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| T |
8755371 |
acaaataacgtggacagctt |
8755352 |
T |
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