View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_high_1 (Length: 711)

Name: NF16515_high_1
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_high_1
NF16515_high_1
[»] chr4 (5 HSPs)
chr4 (57-262)||(4880520-4880734)
chr4 (57-204)||(4903644-4903794)
chr4 (628-698)||(4880326-4880396)
chr4 (16-201)||(3955344-3955531)
chr4 (51-141)||(47249366-47249456)
[»] chr1 (1 HSPs)
chr1 (51-141)||(25623714-25623804)
[»] chr8 (1 HSPs)
chr8 (261-319)||(40460554-40460612)
[»] chr3 (1 HSPs)
chr3 (51-141)||(10533276-10533366)
[»] chr6 (2 HSPs)
chr6 (78-146)||(28495155-28495223)
chr6 (78-146)||(29807564-29807632)
[»] chr5 (1 HSPs)
chr5 (157-204)||(39261490-39261537)
[»] scaffold0009 (1 HSPs)
scaffold0009 (51-141)||(92022-92112)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 57 - 262
Target Start/End: Complemental strand, 4880734 - 4880520
Alignment:
Q  57 gagactatctc-gaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgttatactcggac--t 153  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||       
T  4880734 gagactatctcagaaaatcgtgaaagagttgcagtggaagttccttcgtgaagatgtcaacaatttggtaataagaaggaacatgtaatactcggacctc 4880635  T
Q  154 actatgagcaactttttcacacacaaaaagaatatccatctcgatgtgc------ttcaaaagttgatgttgaacggcgttattggaaggataaactaca 247  Q
    |  |  ||||||||| |||| ||||||| ||||||||||||||||||||      ||| || ||||||||||||||| ||| |   ||||||||||||||    
T  4880634 aacacaagcaactttctcacgcacaaaatgaatatccatctcgatgtgctttgaattcgaacgttgatgttgaacggggttgtcataaggataaactaca 4880535  T
Q  248 cttaaattatcacaa 262  Q
    |||| ||||||||||    
T  4880534 cttacattatcacaa 4880520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 4903794 - 4903644
Alignment:
Q  57 gagactatctc-gaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgttatactcggac--t 153  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||| |       
T  4903794 gagactatctcagaaaatcgtgaaagagttgcagtggaagttccttcgtgaagatgtcaacaatttggtaataagaaggaacatgtaatactcggtcctc 4903695  T
Q  154 actatgagcaactttttcacacacaaaaagaatatccatctcgatgtgctt 204  Q
    |  |  ||||||||| |||| ||||||||||||||||||||||||||||||    
T  4903694 aacacaagcaactttctcacgcacaaaaagaatatccatctcgatgtgctt 4903644  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 628 - 698
Target Start/End: Complemental strand, 4880396 - 4880326
Alignment:
Q  628 aaagaatacaatcatagactatttgaccaactattgttccaacacaaaccaattgcttccctattcatctc 698  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  4880396 aaagaatacaatcatagactatttgaccaactattgttccaacacaaaccaactgcttcgctattcatctc 4880326  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 3955531 - 3955344
Alignment:
Q  16 taatacaccctcctaattgaaccaggaggtggagaaatgtcgagactatctcgaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaa 115  Q
    |||||||||| | || ||||| | |||||| ||  ||||| ||||||||| |||||||| | |||||||||||  |||||| | || |||| |||||||     
T  3955531 taatacacccccgtagttgaaacgggaggttgacgaatgttgagactatcacgaaaatcatcaaagagttgcaacggaagtcctttggtgaagatgtcag 3955432  T
Q  116 caatttggtaacgagaaggaacatgttatactcggact--actatgagcaactttttcacacacaaaaagaatatccatctcgatgtg 201  Q
    | ||||||||||| ||||| |||||| | ||||| |||   | | | || ||||| |||| ||||||| | |||||||||||||||||    
T  3955431 cgatttggtaacgtgaagggacatgtaagactcgtacttggccacgggcgactttctcacgcacaaaatgtatatccatctcgatgtg 3955344  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 47249366 - 47249456
Alignment:
Q  51 aatgtcgagactatctcgaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgt 141  Q
    ||||| ||||||||| |||||||| | |||||||||||  |||||| | || |||| ||||||| | ||||||||||| ||||| ||||||    
T  47249366 aatgttgagactatcacgaaaatcatcaaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgt 47249456  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 25623714 - 25623804
Alignment:
Q  51 aatgtcgagactatctcgaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgt 141  Q
    ||||| |||||||||||||||||| | |||||||||||  |||||| | || |||| ||||||| | ||||||||||| ||||| ||||||    
T  25623714 aatgttgagactatctcgaaaatcatcaaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgt 25623804  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 40460554 - 40460612
Alignment:
Q  261 aatagactaaaatagtcttcgtgacaagacagaaaagctccaagagtaagttcctaagc 319  Q
    ||||||||||| ||| |||| ||||||||||  |||||||||| |||||||||||||||    
T  40460554 aatagactaaagtagccttcatgacaagacaataaagctccaaaagtaagttcctaagc 40460612  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 141
Target Start/End: Original strand, 10533276 - 10533366
Alignment:
Q  51 aatgtcgagactatctcgaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgt 141  Q
    ||||| ||||||||| |||||||| | |||||||||||  |||||| | || |||| ||||||| | ||||||||||| ||||| ||||||    
T  10533276 aatgttgagactatcacgaaaatcatcaaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgt 10533366  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 28495155 - 28495223
Alignment:
Q  78 aaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgttatac 146  Q
    ||||||||| |||| |||  ||||||||| ||| ||||||| ||| |||||||||||||||||| ||||    
T  28495155 aaagagttgtagtgcaagccccttcgtgaagatatcaacaagttgataacgagaaggaacatgtaatac 28495223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 29807564 - 29807632
Alignment:
Q  78 aaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgttatac 146  Q
    ||||||||| |||| |||  ||||||||| ||| ||||||| ||| |||||||||||||||||| ||||    
T  29807564 aaagagttgtagtgcaagccccttcgtgaagatatcaacaagttgataacgagaaggaacatgtaatac 29807632  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 39261490 - 39261537
Alignment:
Q  157 atgagcaactttttcacacacaaaaagaatatccatctcgatgtgctt 204  Q
    ||||||||||||||||| ||||||| |||||| |||||| ||||||||    
T  39261490 atgagcaactttttcacgcacaaaatgaatattcatctcaatgtgctt 39261537  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 92112 - 92022
Alignment:
Q  51 aatgtcgagactatctcgaaaatctttaaagagttgcagtggaagttccttcgtgacgatgtcaacaatttggtaacgagaaggaacatgt 141  Q
    ||||| ||||||||| | |||||| | |||||||||||  |||||| | || |||| ||||||| | ||||||||||| ||||| ||||||    
T  92112 aatgttgagactatcacaaaaatcatcaaagagttgcaacggaagtcctttggtgaagatgtcagcgatttggtaacgtgaagggacatgt 92022  T

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