View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_high_10 (Length: 578)
Name: NF16515_high_10
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 45317452 - 45318019
Alignment:
| Q |
1 |
ttgattgattctgtaagtcctatgtacttttctaacagatttaccaatagtagatatgttttaaggttaatgttttgtttcatatatccactcaacctca |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45317452 |
ttgattgattctctaagtcctatgtacttttctaacagatttaccaatattagatatgttttaaggttaatgttttgtttcatatatccactcaacctca |
45317551 |
T |
|
| Q |
101 |
gagcacacaaattttacttaattctggttgtcttattagactaacatactgtagatttttctttacacctattcttctaatagaatgtatgttgatagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45317552 |
gagcacacaaattttacttaattctggttgtcttattagactaacatactgtagatttttctttacacctattcttctaatagaatgtatgttgatagga |
45317651 |
T |
|
| Q |
201 |
agtcgttacacacgtctcagtctttttaggtggtaaaaatgcatctcattgtaaagattttaatcattttcatttattctaacatggtacctggttcgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45317652 |
agtcgttacacacgtctcagtctttttaggtggtaaaaatgcatctcattgtaaagattttaatcattttcatttattct-acatggtacctggttcgta |
45317750 |
T |
|
| Q |
301 |
tcccttcatgttagnnnnnnncattatgtacctagtttttagatttggcaagtggtgctccatgaaaggaaccaannnnnnnngggagaatagagatgaa |
400 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45317751 |
tcccttcatgttagtctttttcattatgtacctagtttttagatttggcaagtggtgctccatgaaaggaaccaattttttttgggagaatagagatgaa |
45317850 |
T |
|
| Q |
401 |
atttttgctatgttctggtttttaattctcatcttccaaatgtttcatgcatgtttagatttcagtttgaaaggttcaaacttgcatttgagccgatcca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45317851 |
atttttgctatgttctggtttttaattctcatcttccaaatgtttcgtgcatgtttagatttcagtttgaaaggttcaaacttgcatttgagccgatcca |
45317950 |
T |
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| Q |
501 |
tcaagagataatgattggctcaaatttttgggacatttcaaaccaaaattccagcacattcatctcact |
569 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45317951 |
tcaagagataatgattggctcaaatttttgggacatttcaaaccaaaattccagcacattcatgtcact |
45318019 |
T |
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