View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_high_13 (Length: 519)
Name: NF16515_high_13
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 6e-63; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 309 - 504
Target Start/End: Complemental strand, 29843120 - 29842923
Alignment:
| Q |
309 |
atgtcctttcaatgtaaaatatttttacactgccgtgtaataatgagagatcacacaatactctttgatgtcacattagtaacttcctttttnnnnnnnt |
408 |
Q |
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| T |
29843120 |
atgtcctttcaatgtaaaacatttttacactgctgtgtaataatgagagatcacacaatactctttgatgtcacattagtaacttcctttttaaaaaaat |
29843021 |
T |
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| Q |
409 |
accatgttacttacttctaagatca--nnnnnnnnngttacacagaaaatttctaaattcatctataatgaggtcattcctttatttaacaccttgct |
504 |
Q |
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| T |
29843020 |
accatgttacttacttctaagatcatttttttttttgttatagagaaaatttctaaattcatctataatgaggtcattcctttatttaacaccttgct |
29842923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 29843381 - 29843225
Alignment:
| Q |
27 |
atttgtgagtctagtaagtacaactcgaatgcattacacgtaatctcacctttcaaacaaaaaaattacacgtaatcttgtacc-cnnnnnnnnnncatt |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29843381 |
atttgtgagtctagtaagtacaactcgaatgcattacacgtaatcttacctttcaaacaaaaaaattacacgtaatcttgtaccaaaaaaaaaaaacatt |
29843282 |
T |
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| Q |
126 |
acacgtaaaaaagggtgttgtaaataagtttaatgcgtcggtctctggttctttgtt |
182 |
Q |
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| T |
29843281 |
acacgtaaaaaagggtgttgtaaataagtttaatgcgtcggtctctggttttttgtt |
29843225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 29843231 - 29843196
Alignment:
| Q |
198 |
ttttggtaggttttcaattgatattgattggatgct |
233 |
Q |
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| T |
29843231 |
ttttgttaggttttcaattgatattgattggatgct |
29843196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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