View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16515_high_20 (Length: 478)
Name: NF16515_high_20
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 10211451 - 10211610
Alignment:
| Q |
1 |
atgcacatgaagagtaaggcataacatactttattcnnnnnnnccaaattccaatgaaagatgaaacaaatggtattttcattgcataataaggtgatcg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10211451 |
atgcacatgaagtgtaaggcataacatactttattcaaaaaaaccaaattccaatgaaagatgaaacaaatggtattttcattgcataataaggtgatcg |
10211550 |
T |
|
| Q |
101 |
atttaaccttttcaaagaaaaatatatacaacgccccgccagaatgcttaagcataccaa |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10211551 |
atttaaccttttcaaagaaaaatatatacaacgccccgccagaatgcttaagcataccaa |
10211610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 279 - 461
Target Start/End: Original strand, 10212027 - 10212215
Alignment:
| Q |
279 |
gtcttacctattcccgcccctattgccaattaataggtgtaactttgaggggatgatgattaaattaattcctactctatgttgttttgtc--gagtcac |
376 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10212027 |
gtcttacctattcccacccctattggcaatgaataggtgtcactttgaggggatgatgattaaattaattcctactctatgttgttttgtctagagtcac |
10212126 |
T |
|
| Q |
377 |
tcctctagnnnnnnnttagggaagtattaccacc----aattaatacaagtggtaaagaactcccataaacaagtagcataccaataac |
461 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10212127 |
tcctctagaaaaaaattagggaagtattaccaacaatgaattaatacaagtggtaaagaactcccttaaacaagtagcataccaataac |
10212215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 162 - 273
Target Start/End: Original strand, 10211804 - 10211915
Alignment:
| Q |
162 |
ggaaacagaaaaaatttcagagataaaatatcaaggtagaagccacaaatttcgacagcagaataccctcttttgtcctgagcattgttaacatgcaaaa |
261 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10211804 |
ggaaacaggaaaaatttcagagataaaatatcaaggtagaagccacaaatttcgacagcagaataccctcttttgtcctggccattgttaacatgcaaaa |
10211903 |
T |
|
| Q |
262 |
ttactagtgtta |
273 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10211904 |
ttactagtgtta |
10211915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 13855367 - 13855253
Alignment:
| Q |
44 |
ccaaattccaatgaaagatgaaacaaatggtatt-ttcattgcataataaggtgatcgatttaaccttttcaaagaaaaatatatacaacgccccgccag |
142 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| | |||||||||||| ||||| || |||||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
13855367 |
ccaaattcctatgaaagatgaaacaaacggtactcttcattgcataacaaggttattgatttaacttttttaacgaaaaatatatacaacgccccgccag |
13855268 |
T |
|
| Q |
143 |
aatgcttaagcatac |
157 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13855267 |
aatgcttaagcatac |
13855253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 13854971 - 13854867
Alignment:
| Q |
170 |
aaaaaatttcagagataaaatatcaaggtagaagccacaaatttcgaca----gcagaataccctcttttgtcctgagcattgttaacatgcaaaattac |
265 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||| || |
|
|
| T |
13854971 |
aaaaaattacagggataaaatatcaaggtagaagccacaaatttcgacagcatgcagaataccctcttttgtcctggccattgttaacatacgaaatgac |
13854872 |
T |
|
| Q |
266 |
tagtg |
270 |
Q |
| |
|
||||| |
|
|
| T |
13854871 |
tagtg |
13854867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 9684398 - 9684477
Alignment:
| Q |
78 |
ttcattgcataataaggtgatcgatttaaccttttcaaagaaaaatatatacaacgccccgccagaatgcttaagcatac |
157 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||| |||| ||||| || |||||||||| |
|
|
| T |
9684398 |
ttcattgcatgagaaggtgatcgatttaactttttcaaagaaaaatatatacaacaccccaccagattgtttaagcatac |
9684477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 10101859 - 10101794
Alignment:
| Q |
91 |
aaggtgatcgatttaaccttttcaaagaaaaatatatacaacgccccgccagaatgcttaagcata |
156 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
10101859 |
aaggtgatcgatttaactttctcagagaaaaatatatacagctccccgccagaatgcttaagcata |
10101794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 10108358 - 10108245
Alignment:
| Q |
44 |
ccaaattccaatgaaagatgaaacaaatggtatt-ttcattgcataataaggtgatcgatttaaccttttcaaagaaaaatatatacaacgccccgccag |
142 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| | ||| ||||| || ||||||| | | || ||||||||||||||||||||||||| || | |||| |
|
|
| T |
10108358 |
ccaaattcgaatgaaagatgaaacaaacagtaatcttcgttgcacaacaaggtgaccagtcta-ccttttcaaagaaaaatatatacaatgctgcaccag |
10108260 |
T |
|
| Q |
143 |
aatgcttaagcatac |
157 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10108259 |
aatgcttaagcatac |
10108245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 10215592 - 10215652
Alignment:
| Q |
210 |
atttcgacagcagaataccctcttttgtcctgagcattgttaacatgcaaaattactagtg |
270 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||||| |||| ||||||| |
|
|
| T |
10215592 |
atttcgacagcagaataccctattttgtcatgtccattgttaacatgcgaaatgactagtg |
10215652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 408
Target Start/End: Complemental strand, 10103163 - 10103027
Alignment:
| Q |
280 |
tcttacctattcccgcccctattgccaattaatag--gtgtaactttgaggggatgatgatt-aaattaattcctactcta---tgttgttttgtc--ga |
371 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||| |||||||||||||||||| ||| ||| | |||||||| || ||||||||| || |
|
|
| T |
10103163 |
tcttacctattcccgcccctattggcaacgaataggagtgtccgtttgaggggatgatgattaaaaataaatgctactctatgctgctgttttgtcgaga |
10103064 |
T |
|
| Q |
372 |
gtcactcctctagnnnnnnnttagggaagtattacca |
408 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |
|
|
| T |
10103063 |
gtcactcctctagaaacaaattagggaagtattacca |
10103027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 10106212 - 10106144
Alignment:
| Q |
320 |
actttgaggggatgatgattaaa--ttaattcctactctatgttgttttgtc--gagtcactcctctag |
384 |
Q |
| |
|
||||||||||||||||||||||| |||| | |||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
10106212 |
actttgaggggatgatgattaaaatttaaatgctactctatgctgttttgtcaagagtcactcttctag |
10106144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University