View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_high_32 (Length: 394)
Name: NF16515_high_32
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_high_32 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 394
Target Start/End: Complemental strand, 3810803 - 3810430
Alignment:
| Q |
22 |
tcccttaaaaatgacaaactagctctataaagttcgaaactaggnnnnnnnnn-ggtgaacaaagcaagcacaaaacacttgcattgcattctcattgta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810803 |
tcccttaaaaatgacaaactagctctataaagttcgaaactaggaaaaaaaaaaggtgaacaaagcaagcacaaaacacttgcattgcattctcattgta |
3810704 |
T |
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| Q |
121 |
atcatgctaatgatgcattaaaactttgaagataatctgtgacttcttgaatcagctcagaatcacaacttaattgagtaggtatcccatcttggttata |
220 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810703 |
atcatgctaatgatgcattaaaactttgaagataatatgtgacttcttgaatcagttcagaatcacaacttaattgagtaggtatcccatcttggttata |
3810604 |
T |
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| Q |
221 |
tagcatatctttcttcttgtgaggagttttgtacctgtttgatcccttattcttcattatttcaaccatgcatgtttgtagagtataaaattttttatcg |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3810603 |
tagcatatctttcttcttgtgaggagttttgtacctgtttgatcccttattcttcattatttcaaccatgcatgtttgtagagtataaatttttttatcg |
3810504 |
T |
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| Q |
321 |
gattgtacacatgaatattcatcaaatgctttctgaactgcatgaataagatcatcaattgacttcattgattc |
394 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810503 |
gattgtacacatgaatattcatcgaatgctttctgaactgcatgaataagatcatcaattgacttcattgattc |
3810430 |
T |
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