View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_high_39 (Length: 359)
Name: NF16515_high_39
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 31223221 - 31223568
Alignment:
| Q |
1 |
atctccaccactcttcccattatagacttgtctaatttaagggaacaatctcttagatctcaaacgatcaacgaaattcgaattgcttgcaaggagtttg |
100 |
Q |
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| T |
31223221 |
atctccaccactcttcccattatagacttgtctaatttaagggaacaatctcttagatctcaaacgatcaacgaaattcgaattgcttgcaaggagtttg |
31223320 |
T |
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| Q |
101 |
gtgtctttcaggtaaaaattaatacacccttggtttgcattttatgagaatttgaaatcacttgttcnnnnnnngttcatatgacattgcaat---nnnn |
197 |
Q |
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| T |
31223321 |
gtgtctttcaggtaaaaattaatacacccttggtttgcatttcatgagaatttgaaatcacttgttctttttttgttcatatgacattgcaataaaataa |
31223420 |
T |
|
| Q |
198 |
nnnnnnnctaacaactaaaagataatgtattactttttaaggggaaagagtgtgttttatcaatataagagataaaatgtttgatgacttgttaaaacat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31223421 |
aaaaaaactaacaactaaaagataatgtattactttttaaggggaaagagtgtgttttatcaatataagggataaaatgtttgatgacttgttaaaacat |
31223520 |
T |
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| Q |
298 |
cctatgtttattttagtacatgtaaatgtacacgtgtattcatatatt |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31223521 |
cctatgtttattttagtacatgtaaatgtacacgtgtattcatatatt |
31223568 |
T |
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