View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_high_4 (Length: 660)

Name: NF16515_high_4
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_high_4
NF16515_high_4
[»] scaffold0386 (3 HSPs)
scaffold0386 (18-556)||(697-1234)
scaffold0386 (18-62)||(1284-1328)
scaffold0386 (602-641)||(1279-1318)
[»] chr4 (4 HSPs)
chr4 (18-556)||(33878719-33879247)
chr4 (18-62)||(33878625-33878669)
chr4 (444-483)||(46673679-46673718)
chr4 (602-633)||(33878643-33878674)
[»] chr5 (7 HSPs)
chr5 (18-556)||(13869339-13869869)
chr5 (18-347)||(27641144-27641473)
chr5 (400-556)||(27640973-27641129)
chr5 (18-62)||(13869241-13869285)
chr5 (18-62)||(27640876-27640920)
chr5 (602-633)||(13869259-13869290)
chr5 (602-633)||(27640894-27640925)
[»] chr7 (4 HSPs)
chr7 (19-556)||(29735123-29735661)
chr7 (446-483)||(8720808-8720845)
chr7 (20-69)||(8721235-8721284)
chr7 (20-62)||(29735715-29735759)
[»] chr3 (2 HSPs)
chr3 (18-556)||(49850840-49851369)
chr3 (19-58)||(49851426-49851465)
[»] chr8 (5 HSPs)
chr8 (380-556)||(38460526-38460702)
chr8 (18-196)||(38460745-38460924)
chr8 (284-333)||(38460700-38460749)
chr8 (444-483)||(44428119-44428158)
chr8 (18-55)||(38460432-38460469)


Alignment Details
Target: scaffold0386 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Original strand, 697 - 1234
Alignment:
Q  18 gtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaaaatagaaacagaaccatcgtc 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||    
T  697 gtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcattatt-tttttttatttaaaaaaaatgaaaatagaaacagaaccatcgtc 795  T
Q  118 atccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaat 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  796 atccttttgcaacgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtgtttgtgaaaat 895  T
Q  218 ctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaat 317  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896 ctaggaacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaat 995  T
Q  318 gcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  996 gcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgca 1095  T
Q  418 tgatttggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaatt 517  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1096 tgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaatt 1195  T
Q  518 attccacaggtttaagcaaagagaagagaaagaaaactc 556  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1196 attccacaggtttaagcaaagagaagagaaagaaaactc 1234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 1328 - 1284
Alignment:
Q  18 gtacataacatgtggcacttacaaacatccaataaaatcatgaca 62  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  1328 gtacataacatgtgacacttacaaacatccaataaaatcatgaca 1284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 641
Target Start/End: Original strand, 1279 - 1318
Alignment:
Q  602 tgacctgtcatgatttcattggatgtttgtaattgtcaca 641  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  1279 tgacctgtcatgattttattggatgtttgtaagtgtcaca 1318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Complemental strand, 33879247 - 33878719
Alignment:
Q  18 gtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaaaatagaaacagaaccatcgtc 117  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||           | |||| ||||||||||||||||||||||||||||    
T  33879247 gtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattata----------taaaaaaaaatgaaaatagaaacagaaccatcgtc 33879158  T
Q  118 atccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaat 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33879157 atccttttgcaacgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctttaatagtgtttgtgaaaat 33879058  T
Q  218 ctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaat 317  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879057 ctaggaacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaat 33878958  T
Q  318 gcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgca 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33878957 gcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctccgca 33878858  T
Q  418 tgatttggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaatt 517  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33878857 tgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaatt 33878758  T
Q  518 attccacaggtttaagcaaagagaagagaaagaaaactc 556  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33878757 attccacaggtttaagcaaagagaagagaaagaaaactc 33878719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 33878625 - 33878669
Alignment:
Q  18 gtacataacatgtggcacttacaaacatccaataaaatcatgaca 62  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  33878625 gtacataacatgtggcacttacaaacatccaatgaaatcatgaca 33878669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 46673718 - 46673679
Alignment:
Q  444 tgcaatgagtagtggatgagccataaccatcttcacaatt 483  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  46673718 tgcaatgagtagtggatgagtcataaccatcttcacaatt 46673679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 633
Target Start/End: Complemental strand, 33878674 - 33878643
Alignment:
Q  602 tgacctgtcatgatttcattggatgtttgtaa 633  Q
    ||||||||||||||||||||||||||||||||    
T  33878674 tgacctgtcatgatttcattggatgtttgtaa 33878643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Complemental strand, 13869869 - 13869339
Alignment:
Q  18 gtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaaaatagaaacagaaccatcgtc 117  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||    
T  13869869 gtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcattatt-ttttttaatttaaaaaaaatgaaaatagaaacagaaccatcgtc 13869771  T
Q  118 atccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaat 217  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  13869770 atccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctattagtgtttctgaaaat 13869671  T
Q  218 ctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaat 317  Q
    ||||||||||       ||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  13869670 ctaggaacat-------aaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaacctttcaagagatctgaatttccaaat 13869578  T
Q  318 gcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgca 417  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  13869577 gcaaagttattaaaactaactattttaatagaatttgacccattgctcgattggattgcaataacacccaatacagcatgatttagaaacaatctctaca 13869478  T
Q  418 tgatttggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaatt 517  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  13869477 tgatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcataatttaaacaacaagagaagtttggcgtttctagaatt 13869378  T
Q  518 attccacaggtttaagcaaagagaagagaaagaaaactc 556  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  13869377 attccaccggtttaagcaaagagaagagaaagaaaactc 13869339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 27641473 - 27641144
Alignment:
Q  18 gtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaaaatagaaacagaaccatcgtc 117  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||         || |||| ||||||||||||||||||||||||||||    
T  27641473 gtacatatcatgtggcacttacaaacattcaatgaaatcatgacatatcattattttttttaatttaaaaaaaaatgaaaatagaaacagaaccatcgtc 27641374  T
Q  118 atccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaat 217  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  27641373 atccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctattagtgtttctgaaaat 27641274  T
Q  218 ctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaat 317  Q
    |||||||||||||||||||||||       |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  27641273 ctaggaacatgttcatcaaccttaaaaaaacattcacccaccatatgtcaactcatggaagagaaaatttcaacctttcaagagatctgaatttccaaat 27641174  T
Q  318 gcaaagttattaaaactaactattttaata 347  Q
    ||||||||||||||||||||||||||||||    
T  27641173 gcaaagttattaaaactaactattttaata 27641144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 400 - 556
Target Start/End: Complemental strand, 27641129 - 27640973
Alignment:
Q  400 ttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaag 499  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  27641129 ttagaaacaatctctacatgatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcataatttaaacaacaagagaag 27641030  T
Q  500 tttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 556  Q
    ||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  27641029 tttggcgtttctagaattattccaccagtttaagcaaagagaagagaaagaaaactc 27640973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 13869241 - 13869285
Alignment:
Q  18 gtacataacatgtggcacttacaaacatccaataaaatcatgaca 62  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  13869241 gtacataacatgtggcacttacaaacatccaatgaaatcatgaca 13869285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 27640876 - 27640920
Alignment:
Q  18 gtacataacatgtggcacttacaaacatccaataaaatcatgaca 62  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  27640876 gtacataacatgtggcacttacaaacatccaatgaaatcatgaca 27640920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 633
Target Start/End: Complemental strand, 13869290 - 13869259
Alignment:
Q  602 tgacctgtcatgatttcattggatgtttgtaa 633  Q
    ||||||||||||||||||||||||||||||||    
T  13869290 tgacctgtcatgatttcattggatgtttgtaa 13869259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 633
Target Start/End: Complemental strand, 27640925 - 27640894
Alignment:
Q  602 tgacctgtcatgatttcattggatgtttgtaa 633  Q
    ||||||||||||||||||||||||||||||||    
T  27640925 tgacctgtcatgatttcattggatgtttgtaa 27640894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 556
Target Start/End: Original strand, 29735123 - 29735661
Alignment:
Q  19 tacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaat--gaaaatagaaacagaaccatcgt 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||| ||||  |||||||||||||||||||||||    
T  29735123 tacataacatgtggcacttacaaacatccaataaaattatgacatatcattatt-ttttttaatttaaaaaaaatatgaaaatagaaacagaaccatcgt 29735221  T
Q  117 catccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaa 216  Q
    ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  29735222 cattcttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgtttaatatttctctaatagtgtttatgaaaa 29735321  T
Q  217 tctaggaacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaa 316  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  29735322 tctaggaacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaaccttttaagagatctgaatttccaaa 29735421  T
Q  317 tgc------aaagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaat 410  Q
    |||      |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29735422 tgcatacaaaaagttattaaaactaactattttaatagaatttaacccattgctcgattggattgcaataacacccaatacagtatggtttagaaacaat 29735521  T
Q  411 ctctgcatgatttggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttc 510  Q
    |||| ||||||||||||||||||||||||||||||||||||      |||||| |||||||||||||||||||||||||||||||| | |||||  |||     
T  29735522 ctctacatgatttggatccgttaattatggtgttgcaatga------gatgagacataaccatcttcacaatttaaacaacaagaggaatttggcatttt 29735615  T
Q  511 tagaattattccacaggtttaagcaaagagaagagaaagaaaactc 556  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  29735616 tagaattattccaccggtttaagcaaagagaagagaaagaaaactc 29735661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 483
Target Start/End: Complemental strand, 8720845 - 8720808
Alignment:
Q  446 caatgagtagtggatgagccataaccatcttcacaatt 483  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8720845 caatgagtagtggatgagacataaccatcttcacaatt 8720808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 8721284 - 8721235
Alignment:
Q  20 acataacatgtggcacttacaaacatccaataaaatcatgacatatcatt 69  Q
    |||||||| |||||| ||| ||||||||||||||| |||||||| |||||    
T  8721284 acataacacgtggcatttagaaacatccaataaaaacatgacatgtcatt 8721235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 29735759 - 29735715
Alignment:
Q  20 acataacatgtggcacttacaaac--atccaataaaatcatgaca 62  Q
    ||||||||||||||||||||||||  ||||||| |||||||||||    
T  29735759 acataacatgtggcacttacaaacatatccaatgaaatcatgaca 29735715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 556
Target Start/End: Original strand, 49850840 - 49851369
Alignment:
Q  18 gtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaatgaaaatagaaacagaaccatcgtc 117  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||| |        ||| |||| ||||||||||||||||| ||||||||||    
T  49850840 gtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcattact-ttttttaattaaaaaaaaatgaaaatagaaacataaccatcgtc 49850938  T
Q  118 atccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtgtttgtgaaaat 217  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  49850939 atccttttgcatcgtggtatagatcatgtcttattttgaatcgctcataaactgaatctatgttcttgttttatatttctctaatagtatttctgaaaat 49851038  T
Q  218 ctaggaacatgttc---atcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttcca 314  Q
    ||||||||||||||   |||||||||       ||||| |||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||    
T  49851039 ctaggaacatgttcaatatcaaccttaaaaaaacattcggccatcatatctcaactcatggaagagaaaatttcaaccttttaagagatctgaatttcca 49851138  T
Q  315 aatgcaaagttattaaaactaactattttaatataatttgacccattgctcgattggattgc---aataacacccaatacagcatggtttagaaacaatc 411  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||   ||||||||||||||||||||| |||||||||||||    
T  49851139 aatgcaaagttattaaaactaactattttaatagaatttgacccattgctcaattggattgcaataataacacccaatacagcatgatttagaaacaatc 49851238  T
Q  412 tctgcatgatttggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttct 511  Q
    ||| ||              ||||||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  49851239 tctaca--------------taattatggtgttacaataagcagtggatgagacataaccatcttcacaatttaaacaacaagggaagtttggcgtttct 49851324  T
Q  512 agaattattccacaggtttaagcaaagagaagagaaagaaaactc 556  Q
    |||||||||||||  |||||||||||||||| |||||||||||||    
T  49851325 agaattattccaccagtttaagcaaagagaaaagaaagaaaactc 49851369  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 49851465 - 49851426
Alignment:
Q  19 tacataacatgtggcacttacaaacatccaataaaatcat 58  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  49851465 tacataacatgtggcacttacaaacatccaatgaaatcat 49851426  T

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Target: chr8 (Bit Score: 153; Significance: 9e-81; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 380 - 556
Target Start/End: Complemental strand, 38460702 - 38460526
Alignment:
Q  380 aacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagtagtggatgagccataaccatcttcac 479  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  38460702 aacacccaatacaacatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagcagtggatgagacataaccatcttcac 38460603  T
Q  480 aatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 556  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38460602 aatttaaacaacaagagatatttggagtttctagacttattccacaggtttaagcaaagagaagagaaagaaaactc 38460526  T

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Target: chr8; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 38460924 - 38460745
Alignment:
Q  18 gtacataacatgtggcacttacaaacatccaataaaatcatgacatatcattattannnnnnnatttaaaacaaa-tgaaaatagaaacagaaccatcgt 116  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||        |||||||| ||| ||||||||||||||||||||||||    
T  38460924 gtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcattatttatttttaatttaaaaaaaaatgaaaatagaaacagaaccatcgt 38460825  T
Q  117 catccttttgcaacgtggtatagatcatgttttattttgaatcgctcataaactgaatctatgttcttgttttatatttc 196  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38460824 catccttttgcaacgtggtatagatcatgtcttattttgaatcgctcataaactaaatctatgttcttgttttatatttc 38460745  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 38460749 - 38460700
Alignment:
Q  284 atttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaac 333  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38460749 atttcaacctttcaagagatttgaatttccaaatgcaaagttattaaaac 38460700  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 444 - 483
Target Start/End: Original strand, 44428119 - 44428158
Alignment:
Q  444 tgcaatgagtagtggatgagccataaccatcttcacaatt 483  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  44428119 tgcaatgagtagtggatgagacataaccatcttcacaatt 44428158  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 38460432 - 38460469
Alignment:
Q  18 gtacataacatgtggcacttacaaacatccaataaaat 55  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  38460432 gtacataacatgtggcacttacaaacatccaatgaaat 38460469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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