View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_high_48 (Length: 321)
Name: NF16515_high_48
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_high_48 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 23083672 - 23083364
Alignment:
| Q |
13 |
gaaaccaagcgaactcaaaggttggtgacaa-gttaaagaacaagtgcttcaagtgtcataagatcggtcacttcaagaggggtcattccgagttagggg |
111 |
Q |
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| T |
23083672 |
gaaaccaagcgaagtcaaaggttggtgacaaagttaaagaacaagtgcttcaattgtcataagatcggtcacttcaagaggggtcgttccgagttagggg |
23083573 |
T |
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| Q |
112 |
gcaatgatgattctgctatatttgtcatcgccttagaggactatgaggatgcggggtactttggtggtgtctttttgggatgactaagaagttagataat |
211 |
Q |
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| T |
23083572 |
gccatgatgattatgctatatttgtcatcgccttagaggactatgaggatgcggt-tactttggtggtgtctttttgggatgactaagaaggtagataat |
23083474 |
T |
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| Q |
212 |
ctcaccttggaaacgacgaaacttgcaaattgacctttatgtagaaggggtgtttgtctagagagaatactaaatgttagtctcgaaagatgaaggtaat |
311 |
Q |
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| T |
23083473 |
ctcaccttggaaacgacgaaacttgcaaatcgaccttcatgtagaaggggtgtttgtctagagagaatactaaatgttagtctcgaaagacgaaggtaat |
23083374 |
T |
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| Q |
312 |
aacagtcgtg |
321 |
Q |
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| T |
23083373 |
accagtcgtg |
23083364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 38281124 - 38281212
Alignment:
| Q |
170 |
ctttggtggtgtctttttgggatgactaagaagttagataatctcaccttggaaacgacgaaacttgcaaattgacctttatgtagaag |
258 |
Q |
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| T |
38281124 |
ctttgatggcgtcttgttgggatgaggaagaaggtggagtatctcaccttggaaacgatgacacttgcaatttgacctttacgtagaag |
38281212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 10380214 - 10380111
Alignment:
| Q |
24 |
aactcaaaggttggtgacaagttaaagaacaagtgcttcaagtgtcataagatcggtcacttcaagaggggtcattccgagttagggggcaatgatgatt |
123 |
Q |
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|||||||||| ||||||||||| ||| ||||||||||| ||||||| |||| ||| ||||| ||| ||||| ||| |||||| || |||||| |||| |
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| T |
10380214 |
aactcaaagggtggtgacaagtcgaagtacaagtgcttctagtgtcacaagaccggccacttgaagcggggttgttctgagttataggacaatgacgatt |
10380115 |
T |
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| Q |
124 |
ctgc |
127 |
Q |
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|||| |
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| T |
10380114 |
ctgc |
10380111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 24570404 - 24570459
Alignment:
| Q |
210 |
atctcaccttggaaacgacgaaacttgcaaattgacctttatgtagaaggggtgtt |
265 |
Q |
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| T |
24570404 |
atctcacctttgaaacaacaacacttgcaaattgaccttcatgtagaaggggtgtt |
24570459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 16604384 - 16604451
Alignment:
| Q |
210 |
atctcaccttggaaacgacgaaacttgcaaattgacctttatgtagaaggggtgtttgtctagagaga |
277 |
Q |
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| T |
16604384 |
atctgaccttgaaaacaatgacacttgcaagttgaccttcatgtagaaggggtgtttgtctagtgaga |
16604451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 10456607 - 10456542
Alignment:
| Q |
211 |
tctcaccttggaaacgacgaaacttgcaaattgacctttatgtagaaggggtgtttgtctagagaga |
277 |
Q |
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| T |
10456607 |
tctcaccttggaaacgatgacacttgcaagttgaccctcatgtag-aggggtgttcgtctggagaga |
10456542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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