View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_high_51 (Length: 314)
Name: NF16515_high_51
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 4963309 - 4963017
Alignment:
| Q |
17 |
acaaacccgatcatatgtaaaagcttcattgcgtaccatgaaaggtactcttttctggannnnnnnnnnnnattatgcgtaatgttccacttgattgaag |
116 |
Q |
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| T |
4963309 |
acaaacctgatcatatgtaaatgcttcattgcgtaccatgaaaggtactcttttctggattttttttttt-attatgcgtaatgttccacttgattgaag |
4963211 |
T |
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| Q |
117 |
cctttgactaaacaaaagaagccaattttgagtaagcaatggttggtatcaacactatgcaatatgccataggttgaactaattttaagataatatttaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4963210 |
cctttgactaaacaaaagaagccaattttgagtaagcaatggttggtatcaacactatgcaatatgccataggttgaactaattttaagataatatttaa |
4963111 |
T |
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| Q |
217 |
acaatttgaactaaattttcattatttttatttcaatatatcttac------actttcaattgattttgtc-tttttctacatattgtacctat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4963110 |
acaatttgaactaaattttcattatttttatttcaatatatcttacacttacactttcaattgattttgtcttttttctacatattgtacctat |
4963017 |
T |
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