View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_high_53 (Length: 304)
Name: NF16515_high_53
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 51756583 - 51756282
Alignment:
| Q |
1 |
cacaacacaatttcatttcactcttcaattcattaccaactttgacacttaatttattttctgatacttgaatatggaatattaattttatatacatgat |
100 |
Q |
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| T |
51756583 |
cacaacacaatttcatttcactcttcaattcattaccaactttgacacttaatttattttctgatacttgaatatggaatattaattttatatacatgat |
51756484 |
T |
|
| Q |
101 |
tgacaaaaagagatacagaaaaaatatacggagaattaattggttgctctatatcaacactttgcgttacaaatttgagtcccaaagagcatgaatgagg |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51756483 |
tgacaaaaagagatacagaaaaaatgtacggagaattaattggttgctctatatcaacactttgcgttacaaatttgagagccaaagagcatgaatgagg |
51756384 |
T |
|
| Q |
201 |
agaggattatatatcaacttatcatgatatatgttatccaaattaattaacccaccaccatatatacattgatgatagcaatattattataacataccta |
300 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
51756383 |
agatgattatatatcaacttatcatgatatatattatccaaattaattaacccaccaccatatatacattgatgataacaatattattataacatactta |
51756284 |
T |
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| Q |
301 |
tg |
302 |
Q |
| |
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|| |
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|
| T |
51756283 |
tg |
51756282 |
T |
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