View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16515_high_7 (Length: 618)
Name: NF16515_high_7
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 16 - 601
Target Start/End: Original strand, 44003209 - 44003788
Alignment:
| Q |
16 |
atatcaaccttatgagacaagaataagagacaaaccaaagttgaaacctagtagaatagtattggtgtacaagagttggttaagattcagctatgcatct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44003209 |
atatcaaccttatgagacaagaataagagacaaaccaaagttgaaacctagtagaatagtattggtgtacaagagttggttaagattcagctatgcatct |
44003308 |
T |
|
| Q |
116 |
aacagtttctgttattgtttacctctcgatagagtagttaaaaacactagataacaaattatgtacagatttaagaaggttaacaaatgttaacgaaaca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44003309 |
aacagtttctgttattgtttacctctcgatagagtagttaaaaacactagataacaaattatgtacagatttaagaaggttaacaaatgttaacgaaaca |
44003408 |
T |
|
| Q |
216 |
aatgtaaaaatttcaaggttaatatcatcatgacatggaattcaagaaaataatgaatgtggaaacaatcaaacatcccctacttgtcaaaattggacat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44003409 |
aatgtaaaaatttcaaggttaatatcatcatgacatggaattcaagaaaataataaatgtgggaacaatcaaacatcccctacttgtcaaaattggacat |
44003508 |
T |
|
| Q |
316 |
aagtaaacaaaacatgtatagtatcaaaattgattttaattttagaaagtccaagaccagatgaggcaatctccataaatacttgaaaccgctttagaca |
415 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44003509 |
aaataaacaaaacatgtatagtatcaaaattgattttaattttagaaagtccaagaccagatgaggcaatctccataaatacttgaaaccgctttagaca |
44003608 |
T |
|
| Q |
416 |
tactacatgttactattttaagcaggtttcactaattaggataataataaatcaatcagctagctagtagtttgtagaaacaaacacaaacggttacata |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44003609 |
---tacatgttactattttaagcaggtttcactaattagg---ataataaatcaatcagctagctagtagtttgtagaaacaaacacaaacggttacata |
44003702 |
T |
|
| Q |
516 |
aacagcatcgaaatgtttttgtatcaatgaatattacctcaaacagatgatcaagaaagaagtgagtcaaagagccagcagatatc |
601 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44003703 |
aacagcatcgaaatgttattgtatcaatgaatattacctcaaacagatgatcaagaaagaagtgagtcaaagagccagcagatatc |
44003788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University