View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_high_77 (Length: 243)

Name: NF16515_high_77
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_high_77
NF16515_high_77
[»] chr4 (1 HSPs)
chr4 (15-224)||(40823666-40823875)
[»] chr7 (23 HSPs)
chr7 (15-224)||(20289276-20289485)
chr7 (22-102)||(20062518-20062598)
chr7 (22-98)||(20303721-20303797)
chr7 (15-123)||(20168016-20168124)
chr7 (15-98)||(20284965-20285048)
chr7 (15-97)||(20264026-20264108)
chr7 (15-97)||(20231567-20231649)
chr7 (15-97)||(20243632-20243714)
chr7 (15-104)||(20279535-20279624)
chr7 (15-98)||(20005334-20005417)
chr7 (15-98)||(20294682-20294765)
chr7 (165-220)||(20062398-20062453)
chr7 (22-104)||(20273838-20273920)
chr7 (15-60)||(19939131-19939176)
chr7 (15-60)||(19970270-19970315)
chr7 (168-220)||(20294835-20294887)
chr7 (165-224)||(19939307-19939366)
chr7 (165-224)||(19970446-19970505)
chr7 (165-220)||(20231732-20231787)
chr7 (171-220)||(20243810-20243859)
chr7 (168-220)||(20167919-20167971)
chr7 (168-220)||(20303876-20303928)
chr7 (168-218)||(20285118-20285168)
[»] chr8 (1 HSPs)
chr8 (156-220)||(4159657-4159721)
[»] chr2 (3 HSPs)
chr2 (171-220)||(2716891-2716940)
chr2 (171-220)||(2723514-2723563)
chr2 (171-220)||(2745344-2745393)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 40823875 - 40823666
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgccttcctcatcta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40823875 aatatcagactttggtatggctagaatctttggagggagagaagataagaccaatactattagggttgtcggaacttagtaagtgtgccttcctcatcta 40823776  T
Q  115 attttatagtaaaatacttctcgtataatttattacataaaaaatacagcggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40823775 attttatagtaaaatacttctcgtataatttattacataaaaaatgcagcggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatc 40823676  T
Q  215 agatgtcttt 224  Q
    ||||||||||    
T  40823675 agatgtcttt 40823666  T

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Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 20289276 - 20289485
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgccttcctcatcta 114  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||  |  |||||||| |||||||||||||||||||||||||||||||||  || |    
T  20289276 aatatcagactttggtatggctagaatcttcgaagggagagaagatacagaaaatactataagggttgtcggaacttagtaagtgtgccttccttgtcca 20289375  T
Q  115 attttatagtaaaatacttctcgtataatttattacataaaaaatacagcggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatc 214  Q
    |||||||||||||||||||   | ||||| | ||||||||||||| ||| |||||||| || || ||||| || ||||||||||||||||||||||||||    
T  20289376 attttatagtaaaatacttggagaataatatgttacataaaaaatgcagtggttatatatctcccgaatacgcaatgcaaggactgttttcagagaaatc 20289475  T
Q  215 agatgtcttt 224  Q
    ||||||||||    
T  20289476 agatgtcttt 20289485  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 20062598 - 20062518
Alignment:
Q  22 gactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgc 102  Q
    |||||||| ||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  20062598 gactttggaatggctagaatctttggtggaagagaagatcaggccaatactactagggttgtcggaacttagtaagtgtgc 20062518  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 20303721 - 20303797
Alignment:
Q  22 gactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagt 98  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||  |||||||||||||||||||||||    
T  20303721 gactttggtatggctagaatctttggagggagagaaaatcaggccaatactaccagggttgtcggaacttagtaagt 20303797  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 20168124 - 20168016
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgccttcctcatcta 114  Q
    ||||||||| ||||||||||||||||||||||||||  | |||||| ||||||||||||  ||| |||| ||||||||||||||| |||||||| ||| |    
T  20168124 aatatcagaatttggtatggctagaatctttggaggaggtgaagatcaggccaatactagcaggattgttggaacttagtaagtgcgccttccttatcca 20168025  T
Q  115 attttatag 123  Q
    || ||||||    
T  20168024 atattatag 20168016  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 20284965 - 20285048
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagt 98  Q
    |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||  ||| | |||||||||||||||||    
T  20284965 aatatcagactttggtatggttagaatctttggagggggagaagatcaggccaatactagaaggatagtcggaacttagtaagt 20285048  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 20264026 - 20264108
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaag 97  Q
    ||||||||||||||||||||||||||||||||||||  | |||||| ||||||||||||  ||| ||||||||||||||||||    
T  20264026 aatatcagactttggtatggctagaatctttggaggaggtgaagatcaggccaatactagaaggattgtcggaacttagtaag 20264108  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 20231567 - 20231649
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaag 97  Q
    ||||||||||||||||||||||||||||||||||||  | |||||| |||||||||| |  ||| ||||||||||||||||||    
T  20231567 aatatcagactttggtatggctagaatctttggaggaggtgaagatcaggccaataccagaaggattgtcggaacttagtaag 20231649  T

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Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 20243632 - 20243714
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaag 97  Q
    |||||||||||||||| |||||||||| ||||||||  | |||||| ||||||||||||  ||| ||||||||||||||||||    
T  20243632 aatatcagactttggtctggctagaatatttggaggaggtgaagatcaggccaatactagaaggattgtcggaacttagtaag 20243714  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 20279535 - 20279624
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgcct 104  Q
    ||||||||||||||||||||||||||||||||||||| ||||  || ||| |||||||   ||  |||||||||| ||||||||||||||    
T  20279535 aatatcagactttggtatggctagaatctttggagggggagacaatcaggtcaatacttccagaattgtcggaacatagtaagtgtgcct 20279624  T

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Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 20005417 - 20005334
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagt 98  Q
    |||||| |||||||||||||| ||||||||||||| ||| |||||| | |||||||||   |||||||||||||| ||||||||    
T  20005417 aatatctgactttggtatggccagaatctttggagtgagtgaagatcatgccaatactcaaagggttgtcggaacatagtaagt 20005334  T

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Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 20294682 - 20294765
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagt 98  Q
    |||||| |||||||| |||||||||||||||||||| |||||| || ||||||||||||  ||| |||| ||||| ||||||||    
T  20294682 aatatcggactttggaatggctagaatctttggaggcagagaacatcaggccaatactagcaggattgttggaacgtagtaagt 20294765  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 20062453 - 20062398
Alignment:
Q  165 ggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgt 220  Q
    ||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||    
T  20062453 ggttatatgtctcctgaatacgcaatgcaaggacttttttcagagaaatcagatgt 20062398  T

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Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 20273838 - 20273920
Alignment:
Q  22 gactttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgcct 104  Q
    |||||||||||||||||||||||||||||| |||| ||| ||| ||||||    ||  |||| ||||||||||||||||||||    
T  20273838 gactttggtatggctagaatctttggagggggagacgatcaggtcaatacctccagaattgttggaacttagtaagtgtgcct 20273920  T

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Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 19939131 - 19939176
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagat 60  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  19939131 aatatcagactttggtatggccagaatctttggagggagtgaagat 19939176  T

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Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 19970270 - 19970315
Alignment:
Q  15 aatatcagactttggtatggctagaatctttggagggagagaagat 60  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  19970270 aatatcagactttggtatggccagaatctttggagggagtgaagat 19970315  T

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Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 20294835 - 20294887
Alignment:
Q  168 tatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgt 220  Q
    |||||||| ||||||||||| ||||||||| | ||||||||||||||||||||    
T  20294835 tatatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgt 20294887  T

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Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 19939307 - 19939366
Alignment:
Q  165 ggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgtcttt 224  Q
    ||||||||||| || |||||||| ||||||||||||||||| || ||||| |||||||||    
T  19939307 ggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtcttt 19939366  T

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Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 19970446 - 19970505
Alignment:
Q  165 ggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgtcttt 224  Q
    ||||||||||| || |||||||| ||||||||||||||||| || ||||| |||||||||    
T  19970446 ggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtcttt 19970505  T

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Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 20231732 - 20231787
Alignment:
Q  165 ggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgt 220  Q
    ||||| ||||| ||||||||||| ||||||||| | ||||||||||||||||||||    
T  20231732 ggttacatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgt 20231787  T

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Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 20243810 - 20243859
Alignment:
Q  171 atgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgt 220  Q
    ||||| ||||||||||| ||||||||| | ||||||||||||||||||||    
T  20243810 atgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgt 20243859  T

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Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 20167971 - 20167919
Alignment:
Q  168 tatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgt 220  Q
    |||||||| || || ||||| ||||||||||| ||||||||||||||||||||    
T  20167971 tatatgtctcccgagtatgcaatgcaaggactattttcagagaaatcagatgt 20167919  T

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Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 20303876 - 20303928
Alignment:
Q  168 tatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgt 220  Q
    |||||||| |||||||| || |||| |||||| ||||||||||||||||||||    
T  20303876 tatatgtctcctgaatacgcaatgcgaggacttttttcagagaaatcagatgt 20303928  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 20285118 - 20285168
Alignment:
Q  168 tatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagat 218  Q
    |||||||| || |||||||| ||||||||| | ||||||||||||||||||    
T  20285118 tatatgtctccggaatatgcaatgcaaggattattttcagagaaatcagat 20285168  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 4159721 - 4159657
Alignment:
Q  156 aaatacagcggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgt 220  Q
    |||| ||| ||||||||| | ||||||||||| ||| ||||||| ||||| ||||||||||||||    
T  4159721 aaatgcagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgt 4159657  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 2716940 - 2716891
Alignment:
Q  171 atgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgt 220  Q
    ||||| || |||||||| ||| ||||| ||||||||||||||||||||||    
T  2716940 atgtctccggaatatgcaatggaaggattgttttcagagaaatcagatgt 2716891  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 2723563 - 2723514
Alignment:
Q  171 atgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgt 220  Q
    ||||| || |||||||| ||| |||| |||||||||||||||||||||||    
T  2723563 atgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgt 2723514  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 2745393 - 2745344
Alignment:
Q  171 atgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgt 220  Q
    ||||| || |||||||| ||| |||| |||||||||||||||||||||||    
T  2745393 atgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgt 2745344  T

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