View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_high_87 (Length: 217)
Name: NF16515_high_87
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_high_87 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 42394148 - 42393945
Alignment:
| Q |
14 |
catagggaagccgaacttgtcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgat |
113 |
Q |
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| T |
42394148 |
catagggaagccgaacttgtcagatttttttcctgcgctggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgat |
42394049 |
T |
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| Q |
114 |
ggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaagg |
213 |
Q |
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| T |
42394048 |
ggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaagg |
42393949 |
T |
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| Q |
214 |
agga |
217 |
Q |
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|||| |
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| T |
42393948 |
agga |
42393945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 42378229 - 42378027
Alignment:
| Q |
18 |
gggaagccgaacttgtcggannnnnnncctgcgttggctcggtttgatttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaa |
117 |
Q |
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| T |
42378229 |
gggaagccgaatttgtcggatttttttcctgggttggcccggtttgatttgcagggtgttgtgaaagatatgaatgctttggtgcctcgctttgatggga |
42378130 |
T |
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| Q |
118 |
tatttgaaaagatgattggtgaacgaatggtgaaggatgtagaaggaaaggag---agtgaaagtaaggattttttgcagtttttgttgaatttgaagga |
214 |
Q |
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| T |
42378129 |
tatttgagaagatgattggtgaacgattgaagaaggaagaggatgggaaggagaataatgggagtagggactttctgcagtttttgttgaatttgaagga |
42378030 |
T |
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| Q |
215 |
gga |
217 |
Q |
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||| |
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| T |
42378029 |
gga |
42378027 |
T |
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