View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_high_90 (Length: 214)
Name: NF16515_high_90
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_high_90 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 16331411 - 16331579
Alignment:
| Q |
1 |
ttaaaagtaaattttcacaaaagtagttggtgggaataaacgttttccaatcatggttagaagaaacaatcacatcgttgaacataacaccacataacaa |
100 |
Q |
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| T |
16331411 |
ttaaaagtaaattttcacaaaagtagttggtgggaataaacgttttccaatcatgattagaagaagcaatcacatcgttgaacataacacaacataacaa |
16331510 |
T |
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| Q |
101 |
cacattgaaagatctctactctttctatatgataatccactccttacattattcaccattcgttctcaag |
170 |
Q |
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| T |
16331511 |
cacattgaaagatctctactcttcctatatga-aatccactccttacactattcaccattcgttctcaag |
16331579 |
T |
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Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 27957437 - 27957249
Alignment:
| Q |
1 |
ttaaaagtaaattttcacaaaagtagttggtgggaataaacgttttccaatcatggttagaagaaacaatcacatcgttgaacataacaccacataacaa |
100 |
Q |
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||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
27957437 |
ttaaaagtaaattttaacaaaactagttggtgggaataaacattttccaatcatggttagaagaagcaatcacatggttgaacataacaccacat----- |
27957343 |
T |
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| Q |
101 |
cacattgaaagatctctactctttctatatgataatccactccttacattattcaccattcgttctcaagnnnnnnnacttttgggattatctctaatg |
199 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
27957342 |
-----tgaaagatctctactatttctatatgataatccactccttacattattcaccattcgttctcaagtttttttacttttgggattacctctaatg |
27957249 |
T |
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