View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_11 (Length: 531)
Name: NF16515_low_11
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_11 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 15 - 516
Target Start/End: Original strand, 80835 - 81335
Alignment:
| Q |
15 |
aagacaagagacaagagagggactaggtgaacggg-ccaatttcatgatagtggaagtgcattttggatagatagtattcttcctaggctcattcatgtt |
113 |
Q |
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| T |
80835 |
aagacaagagacaagagagggactaggtgaacggggccaatttcatgatagtggaagtgcattttggatagatagtattcttcctaggctcattcatgtt |
80934 |
T |
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| Q |
114 |
gcacaaagagattgaattttgtaggccatttattctccaacaaatgagacaatgccatgtgttttcaaggacaacatgatattcaaagaaatgtttaagg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
80935 |
gcacaaagagattgaattttgtaggccatttattctccaacaaatgagacaatgccatgtgttttcaaggacaacatggtattcaaagaaatgtttaagg |
81034 |
T |
|
| Q |
214 |
ggtcatgtggcacatgcatctatctgaagacaatacaatagctatctttggtcccaggtttcatctaacaattgctagtggttgaaagaacttcctttct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
81035 |
ggtcatgtggcacatgcatctatctgaagacaatacaatagctatctttggtcccaggtttcatctaacaattgctagtggttgaaagaacttcctttct |
81134 |
T |
|
| Q |
314 |
acaaatggaactataggttgagacatatgaggcacacaaacgcgctagatataatactaatattgactcgtaaacacttataataaaattgattatatgc |
413 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |
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| T |
81135 |
acaaatggaactataggttgagatatatgagg--cacaaacgcgctagatataatactaacactgactcgtaaacatttataataaaattgattatatgt |
81232 |
T |
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| Q |
414 |
aatcacatgtagcggtatcagatgctagttcatgtttgacacaaaatacataatctatccgaagagggcattgcaaagaggaattataggcaaccgttct |
513 |
Q |
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| T |
81233 |
aatcacatgtagcggtgtcagatgctagttcatgtttgacacaaaatacataatctatccgaagagggcattgcaaagaggaattataggcaaccgttct |
81332 |
T |
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| Q |
514 |
aat |
516 |
Q |
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||| |
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| T |
81333 |
aat |
81335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 15 - 516
Target Start/End: Complemental strand, 40885449 - 40884949
Alignment:
| Q |
15 |
aagacaagagacaagagagggactaggtgaacggg-ccaatttcatgatagtggaagtgcattttggatagatagtattcttcctaggctcattcatgtt |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40885449 |
aagacaagagacaagagagggactaggtgaacggggccaatttcatgatagtggaagtgcattttggatagatagtattcttcctaggctcattcatgtt |
40885350 |
T |
|
| Q |
114 |
gcacaaagagattgaattttgtaggccatttattctccaacaaatgagacaatgccatgtgttttcaaggacaacatgatattcaaagaaatgtttaagg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40885349 |
gcacaaagagattgaattttgtaggccatttattctccaacaaatgagacaatgccatgtgttttcaaggacaacatggtattcaaagaaatgtttaagg |
40885250 |
T |
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| Q |
214 |
ggtcatgtggcacatgcatctatctgaagacaatacaatagctatctttggtcccaggtttcatctaacaattgctagtggttgaaagaacttcctttct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40885249 |
ggtcatgtggcacatgcatctatctgaagacaatacaatagctatctttggtcccaggtttcatctaacaattgctagtggttgaaagaacttcctttct |
40885150 |
T |
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| Q |
314 |
acaaatggaactataggttgagacatatgaggcacacaaacgcgctagatataatactaatattgactcgtaaacacttataataaaattgattatatgc |
413 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |
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| T |
40885149 |
acaaatggaactataggttgagatatatgagg--cacaaacgcgctagatataatactaacactgactcgtaaacatttataataaaattgattatatgt |
40885052 |
T |
|
| Q |
414 |
aatcacatgtagcggtatcagatgctagttcatgtttgacacaaaatacataatctatccgaagagggcattgcaaagaggaattataggcaaccgttct |
513 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40885051 |
aatcacatgtagcggtgtcagatgctagttcatgtttgacacaaaatacataatctatccgaagagggcattgcaaagaggaattataggcaaccgttct |
40884952 |
T |
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| Q |
514 |
aat |
516 |
Q |
| |
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||| |
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| T |
40884951 |
aat |
40884949 |
T |
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