View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_low_14 (Length: 510)

Name: NF16515_low_14
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_low_14
NF16515_low_14
[»] chr3 (10 HSPs)
chr3 (19-477)||(51942007-51942451)
chr3 (93-425)||(5155224-5155554)
chr3 (94-419)||(46478252-46478575)
chr3 (266-447)||(4582497-4582678)
chr3 (93-202)||(46550107-46550216)
chr3 (94-170)||(46469899-46469975)
chr3 (137-211)||(47398186-47398260)
chr3 (137-174)||(46490237-46490274)
chr3 (93-167)||(47414786-47414860)
chr3 (385-438)||(4614280-4614333)
[»] chr8 (2 HSPs)
chr8 (92-438)||(9677463-9677807)
chr8 (94-436)||(9693206-9693546)
[»] chr4 (4 HSPs)
chr4 (109-420)||(35160480-35160789)
chr4 (94-171)||(35154336-35154413)
chr4 (266-438)||(35154071-35154243)
chr4 (295-353)||(15555098-15555156)
[»] chr2 (3 HSPs)
chr2 (137-190)||(20143699-20143752)
chr2 (137-190)||(20169758-20169811)
chr2 (317-425)||(20154380-20154488)


Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Complemental strand, 51942451 - 51942007
Alignment:
Q  19 aattaacatgaaataaaagcagtgcatagattgtagggaaaagaataagatatacaatatatataccttgaacatgaaatcaacggaagccaaagtggcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942451 aattaacatgaaataaaagcagtgcatagattgtagggaaaagaataagatatacaatatatataccttgaacatgaaatcaacggaagccaaagtggcc 51942352  T
Q  119 ttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcgaaggagaggtgaggtccaccggcag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51942351 ttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcgacgaaggagaggtgaggtccaccggcag 51942252  T
Q  219 aagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggatcgtaggaagtctagaagttgctgccgt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  51942251 aagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggatcgtaggaagtcgagaagttgctgcggt 51942152  T
Q  319 gtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatgtt 418  Q
    ||||||| || |||             |||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51942151 gtgggacaatcaga-------------atgctgagcacaacttgcagagacaatggcgaaaagacgatgttgttttctgattgttttgagaacaaatgtt 51942065  T
Q  419 tggcgattctgagggaaactcgtgtttgggttgatcatgaagagacattgttcttacga 477  Q
    ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  51942064 tggcgattctgagggaaactcgtgttt-ggttggtcatggagagacattgttcttacga 51942007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 93 - 425
Target Start/End: Complemental strand, 5155554 - 5155224
Alignment:
Q  93 tgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggc 192  Q
    |||||||||| |||  ||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||| ||| | ||||||||||| | |    
T  5155554 tgaaatcaacagaaagcaaagtggccttataatcagaggacacgatttctttgaaggaaggttgaagagaaagggtttgttcaacccatacaccattgac 5155455  T
Q  193 gaaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggatc 292  Q
    ||||||||   |||||||||| |  | |||||||||| |||||||   | ||||||||| || ||||| || | ||||||||| ||||| ||||||||      
T  5155454 gaaggagaatcgaggtccacctgtgggagcagcgtcgaagagcac--gacagaaacaagttgagaggcaagatcgttgagatggtcagtggatttggaca 5155357  T
Q  293 gtaggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgtt 392  Q
    | |||||||| ||||| || ||  |||||||||| | ||||||||||||||| ||||| || ||| |||| || |||| | ||||||| || ||||| ||    
T  5155356 ggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 5155257  T
Q  393 ttctgattgttttgagaacaaatgtttggcgat 425  Q
     ||| ||| |||  |||||| ||||||||||||    
T  5155256 gtctaattctttcaagaacagatgtttggcgat 5155224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 94 - 419
Target Start/End: Complemental strand, 46478575 - 46478252
Alignment:
Q  94 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcg 193  Q
    |||||||||||||| |||||  || ||| | | ||  |||| |||||||| ||||||||||||||||||||||||||  || | ||| ||||| ||| ||    
T  46478575 gaaatcaacggaagacaaagctgctttaaaatgagtggacacgatttgttggaaggaaggttgaagagaaagggtttgatcaacccaaacaccgtcgacg 46478476  T
Q  194 aaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggatcg 293  Q
    || |||||| |||| |||||||| | || ||||||||||||   |  |  ||||| |||||||| |||| ||||||||||||||| || ||||||||| |    
T  46478475 aaagagaggagaggaccaccggcgggagaagcgtcggagag--gatgacggaaacgagctgtgaagcgaagtagttgagatgatcggtggatttggattg 46478378  T
Q  294 taggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttt 393  Q
     |||||||  | |||||| ||  | |||||||| | ||| |||| |||||| || || |||||| |||| || || | | | ||||| |||||||||||     
T  46478377 aaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgattatacttagcacaacttggagtgaaagtggagaaaacacgatgttgttg 46478278  T
Q  394 tctgattgttttgagaacaaatgttt 419  Q
    ||||||| ||| ||||| | ||||||    
T  46478277 tctgattctttggagaagagatgttt 46478252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 447
Target Start/End: Original strand, 4582497 - 4582678
Alignment:
Q  266 agttgagatgatcagttgatttggatcgtaggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcag 365  Q
    |||||||||||||||||||||||||  | |||||||| ||||| || |  | |||||| || | ||||||||||||||||||||||||| || |||| ||    
T  4582497 agttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggag 4582596  T
Q  366 ggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaactcgtgtttgg 447  Q
     || | | | ||||| || ||||| || ||||||| ||||||||| | || ||||||||||||||||||||||  |||||||    
T  4582597 cgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttgg 4582678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 46550107 - 46550216
Alignment:
Q  93 tgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggc 192  Q
    |||||||||| |||||||||||||||||||| ||||  | |||  ||| ||  ||||||||||||||||||||||||| ||| |||||  |||||| | |    
T  46550107 tgaaatcaactgaagccaaagtggccttataatcagtagccatagttttttcaaaggaaggttgaagagaaagggtttgttcaatccacgcaccattgac 46550206  T
Q  193 gaaggagagg 202  Q
    ||| ||||||    
T  46550207 gaaagagagg 46550216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 46469975 - 46469899
Alignment:
Q  94 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttt 170  Q
    |||||||||||||||||||||||| ||||| ||||    |||  ||| |||||||||||||||||||||||||||||    
T  46469975 gaaatcaacggaagccaaagtggctttataatcagtaaccattgtttctttgaaggaaggttgaagagaaagggttt 46469899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 47398186 - 47398260
Alignment:
Q  137 atttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcgaaggagaggtgaggtcca 211  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| || |||| | |||| |||||| ||||||||    
T  47398186 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccacacgccattgacgaaagagaggcgaggtcca 47398260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 46490274 - 46490237
Alignment:
Q  137 atttgtttgaaggaaggttgaagagaaagggttttttc 174  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46490274 atttgtttgaaggaaggttgaagagaaagggttttttc 46490237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 47414786 - 47414860
Alignment:
Q  93 tgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaaggg 167  Q
    ||||||| ||||||| ||||| ||||||||| ||||   | | |||||||||||||||||||| |||||||||||    
T  47414786 tgaaatctacggaagacaaagcggccttataatcaggatagacgatttgtttgaaggaaggtttaagagaaaggg 47414860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 4614280 - 4614333
Alignment:
Q  385 atgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaact 438  Q
    ||||| || ||||||| ||||||||| | |||||||||||||||||||||||||    
T  4614280 atgttcttctctgattcttttgagaaaagatgtttggcgattctgagggaaact 4614333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 92 - 438
Target Start/End: Original strand, 9677463 - 9677807
Alignment:
Q  92 atgaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcgg 191  Q
    ||||||||||| ||||| | |||||||||||| || |  |||||| ||| || |||||||||||||||||||||| |||| || | ||||||||||| ||    
T  9677463 atgaaatcaacagaagcgagagtggccttataatcggtagacatggtttcttggaaggaaggttgaagagaaaggtttttctccacccatacaccattgg 9677562  T
Q  192 cgaaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggat 291  Q
    |||| |||||| |||| ||||||| |||||| || ||   |||   |  | |||||  || || ||| ||| | |||||||||||||  | |||||| |     
T  9677563 cgaaagagaggcgaggaccaccggaagaagctgcatctttgag--gaggacagaaaggagatgagagacgaaggagttgagatgatcgatggatttgaaa 9677660  T
Q  292 cgtaggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgt 391  Q
    || |||||||| ||||| || ||  | || ||||| | ||||||||||||||| || ||||| ||| |||| || |||||| | |||||||||| |||||    
T  9677661 cggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgt 9677760  T
Q  392 tttctgattgttttgagaacaaatgtttggcgattctgagggaaact 438  Q
    | ||||||| ||||||||| | |||||||||||   |||||||||||    
T  9677761 tgtctgattcttttgagaagagatgtttggcgaccgtgagggaaact 9677807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 94 - 436
Target Start/End: Original strand, 9693206 - 9693546
Alignment:
Q  94 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcg 193  Q
    ||||||||| |||| |||||  |||||||| ||||  |||||| ||| |||||||||||||||||||||||||||||| |||| ||| ||||||| ||||    
T  9693206 gaaatcaacagaagacaaagcagccttataatcagtagacatggtttctttgaaggaaggttgaagagaaagggttttctctacccacacaccattggcg 9693305  T
Q  194 aaggagaggtgaggtccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggcgaggtagttgagatgatcagttgatttggatcg 293  Q
    || ||||||||||| ||||||| |||||  |||||   |||   |  | | |||  || || ||| | | | |||||||||||||  | |||||| | ||    
T  9693306 aaagagaggtgaggaccaccggaagaagttgcgtctttgag--gaggacataaaggagatgagagacaaagaagttgagatgatcgatggatttgaaacg 9693403  T
Q  294 taggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttt 393  Q
     |||||||| ||||| || ||  | || ||||| | ||||||| ||||||| |||||||| ||| |||| || |||||| | ||||||||||  || ||     
T  9693404 gaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgagaacaacttggagagacaatggtgaaaagacgacattcttg 9693503  T
Q  394 tctgattgttttgagaacaaatgtttggcgattctgagggaaa 436  Q
    ||||||| ||||||||| | ||||||||||||  |||||||||    
T  9693504 tctgattcttttgagaagagatgtttggcgatggtgagggaaa 9693546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 109 - 420
Target Start/End: Complemental strand, 35160789 - 35160480
Alignment:
Q  109 caaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcggcgaaggagaggtgaggt 208  Q
    ||||||||||||||| ||    |||| ||||||||||||||||| ||||||||||||||||||||| | ||| ||||| ||| |||| |||||||||||     
T  35160789 caaagtggccttataatcttcagacacgatttgtttgaaggaagattgaagagaaagggttttttccagccaaacaccgtcgacgaaagagaggtgagga 35160690  T
Q  209 ccaccggcagaagcagcgtcggagagcacaatagagaaacaagctgtgaggc-gaggtagttgagatgatcagttgatttggatcgtaggaagtctagaa 307  Q
    ||||||| ||||| ||||||   ||| |  ||   ||||   | || ||| | |||| |||||||||||||||| |||||| | || |||||||| ||||    
T  35160689 ccaccggaagaagtagcgtctttgaggatgat--ggaaagttgatgagagactgagg-agttgagatgatcagtggatttgaaacggaggaagtcaagaa 35160593  T
Q  308 gttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttttctgattgttttga 407  Q
    | || ||  |||| | ||| | ||||||||||| ||| |||||||||||| |||| || |||||| ||||||| |||||||| |||||||||| ||| ||    
T  35160592 gctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttgga 35160493  T
Q  408 gaacaaatgtttg 420  Q
    ||| | |||||||    
T  35160492 gaagagatgtttg 35160480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 35154413 - 35154336
Alignment:
Q  94 gaaatcaacggaagccaaagtggccttatagtcagacgacatgatttgtttgaaggaaggttgaagagaaagggtttt 171  Q
    ||||||||| |||| |||||||||||| || || |  | || ||| |||||||||||||||||| |||||||||||||    
T  35154413 gaaatcaacagaagacaaagtggccttgtaatcggtagtcacgatatgtttgaaggaaggttgaggagaaagggtttt 35154336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 438
Target Start/End: Complemental strand, 35154243 - 35154071
Alignment:
Q  266 agttgagatgatcagttgatttggatcgtaggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcag 365  Q
    ||||||||||||  |  |||||| || | |||||||  ||||| || || ||||||| ||| | ||||||||||||||| ||    |||||  |||| ||    
T  35154243 agttgagatgataggcggatttgaattggaggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatgattgcaagcactacttggag 35154144  T
Q  366 ggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttggcgattctgagggaaact 438  Q
     |||||  ||||||| ||||| || ||||||||||  |||||||| | ||||||||||||  |||||||||||    
T  35154143 agacaaaggcgaaaacacgatattcttttctgattcctttgagaaaagatgtttggcgatagtgagggaaact 35154071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 15555156 - 15555098
Alignment:
Q  295 aggaagtctagaagttgctgccgtgtgggaccataagagccagcagcgatcatgctgag 353  Q
    |||||||| |||||||| ||| |||||| ||| | ||||||||||||||| ||||||||    
T  15555156 aggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgag 15555098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 20143752 - 20143699
Alignment:
Q  137 atttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcg 190  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  20143752 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcg 20143699  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 20169758 - 20169811
Alignment:
Q  137 atttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcg 190  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  20169758 atttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccatcg 20169811  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 425
Target Start/End: Complemental strand, 20154488 - 20154380
Alignment:
Q  317 gtgtgggaccataagagccagcagcgatcatgctgagcacatcttgcagggacaatagcgaaaagacgatgttgttttctgattgttttgagaacaaatg 416  Q
    |||||||||| | ||||||||||||| | | ||||| |||| |||| || |||| | ||||||| || ||||| || |||||||||||  |||||| |||    
T  20154488 gtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttgtctgattgtttcaagaacagatg 20154389  T
Q  417 tttggcgat 425  Q
    |||||||||    
T  20154388 tttggcgat 20154380  T

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