View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16515_low_15 (Length: 496)
Name: NF16515_low_15
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 64 - 481
Target Start/End: Complemental strand, 29654860 - 29654436
Alignment:
| Q |
64 |
aagcctacacctccaaaaggcagtccattgttaccaatgcctgaaaaaacaccagctccagtcatgtaattcttctgatccttcaaaccatcttctccag |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29654860 |
aagcctacacctccaaaaggcagtccattgttaccaatgcctgaaaaaacaccagctccagtcatgtaattcttctgatccttcaaaccatcttctccag |
29654761 |
T |
|
| Q |
164 |
caggcacatttcttgcatttgttgcaaccacagcaagagccaaaaccaccaaaatgcaccacttagccatttctctctacaccnnnnnnnnnc-tctcac |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
29654760 |
caggcacatttcttgcatttgttgcaaccacagcaagagccaaaaacaccaaaatgcaccacttagccatttctctctacacctttttttttcctctcac |
29654661 |
T |
|
| Q |
263 |
tatttctaaacttaaagttgatagtatgttcaaaaacaacgtagagggttctccttttaaaaaggagaaaaaaggatacagttgggtggttgggtaaaaa |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29654660 |
tatttctaaacttaaagttgatagtatgttcaaaaacaacgtagagggttctccttttaaaaaggagaaaagaggatacagttgggtggttgggtaaaaa |
29654561 |
T |
|
| Q |
363 |
gtaaatgaacttcaatgctattgcagagtcttttagctgtcaattaacaagcgcattgtaccaaatattactgttataaagtgtacgtatatgttt---- |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29654560 |
gtaaatgaacttcaatgctattgcagagtcttttagctgtcaattaacaagcacattgtaccaaatattactgttataaagtgtacgtatatgttttact |
29654461 |
T |
|
| Q |
459 |
--tctttgtttttactatcttaaat |
481 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
29654460 |
cctatttgtttttactatcttaaat |
29654436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University