View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_16 (Length: 496)
Name: NF16515_low_16
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 37975670 - 37975188
Alignment:
| Q |
1 |
cacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaatctataatgtaatgatcgagatgatatggtttatagcttagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
37975670 |
cacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaatctataatgtaatgatcgagatggtatggtttatggcttagat |
37975571 |
T |
|
| Q |
101 |
tagattctgtgatttattaggcacattacaaagttgacnnnnnnnnnnnnnnnnnnnnnntagggactggtggaataattggtgcttaagttcgaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37975570 |
tagattctgtgatttattaggcacattacaaagttgacaaaagaaaagaaaaaagaagaatagggactggtggaataattggtgcttaagttcgaagaaa |
37975471 |
T |
|
| Q |
201 |
acttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaatgttactatgtttttgttagttagtgaaaatgaaacataacatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37975470 |
acttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaatgttactatgtttttgttagttagtgaaaatgaaacataacatt |
37975371 |
T |
|
| Q |
301 |
gtgtttagggaatctatattggttgaataaagagttggaatccactcaaaattaagcagtagatgtttgatgggaagaataataacatagatatttggaa |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37975370 |
gtgtttagggaatctatattggttgaataaagagttggaatccactcaaaattaagtagtagatgtttgatgggaagaataataacatagatatttggaa |
37975271 |
T |
|
| Q |
401 |
tagagacattaacatgactccatccaacctttgacaacccctctcatatgttaatt--tttgtgtgtcggacgtggaaagatg |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
37975270 |
tagagacattaacatgactccatccaacctttgacaacccctctcatatgttaatttgtgtgtgtgtcggacgtggaaagatg |
37975188 |
T |
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