View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_17 (Length: 494)
Name: NF16515_low_17
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 480
Target Start/End: Original strand, 6809306 - 6809766
Alignment:
| Q |
20 |
gtacacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacgaaatgcagtttccttgattatact |
119 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6809306 |
gtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacgaaatgcagtttccttgattatact |
6809405 |
T |
|
| Q |
120 |
cctcctatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaatagccacaggg |
219 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6809406 |
cctcttatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaatagccacaggg |
6809505 |
T |
|
| Q |
220 |
tacacatctagaatcttttcaatcatttcagtcactcccatctttgctgcaattaaaataggtgacactgttctccttttctcaatagcctcattttctg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||| |
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| T |
6809506 |
tacacatctagaatcttttcaatcatttcagtcactcccatctttgctgcgattaaaattggtgacattgttctccttttcgcaatagcctcattttctg |
6809605 |
T |
|
| Q |
320 |
tatagctctttattttacccatgttatcaccaccatgatcttcaacatgaggacttggtcctgtaaaatcatacttgtataaagaagcgcgctgaatcag |
419 |
Q |
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||| ||||||||||||||| |||| ||||||||||| |||||||||| || |||||||||||| |||||||||||| |||||||||| |||||||||| |
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| T |
6809606 |
tattgctctttattttacctatgtcatcaccaccattctcttcaacattagaacttggtcctgtgaaatcatacttgaataaagaagcatgctgaatcag |
6809705 |
T |
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| Q |
420 |
ttcattcattacttgcttagcccgaataagttttttcttcctcctttggattttctctacc |
480 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
6809706 |
ttcattcattacttgcttagcccgaatatgtttttccttcctcctttggattttctctacc |
6809766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 480
Target Start/End: Original strand, 6817446 - 6817895
Alignment:
| Q |
20 |
gtacacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacgaaatgcagtttccttgattatact |
119 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| || |
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| T |
6817446 |
gtacacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcaccgttaccattga-----------cgaaatgcagtctccttgattattct |
6817534 |
T |
|
| Q |
120 |
cctcctatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaatagccacaggg |
219 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6817535 |
cctctcatttaacaaactatatacatgaggttgcctattctctatggccaaaagaacaacatttttgttctgactgaccacatcttgaatagccacaggg |
6817634 |
T |
|
| Q |
220 |
tacacatctagaatcttttcaatcatttcagtcactcccatctttgctgcaattaaaataggtgacactgttctccttttctcaatagcctcattttctg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
6817635 |
tacacatctagaatcttttcaatcatttcagtcactcccatctttgctgcgattaaaattggtgacactgttctccttttcgcaatagcctcattttctg |
6817734 |
T |
|
| Q |
320 |
tatagctctttattttacccatgttatcaccaccatgatcttcaacatgaggacttggtcctgtaaaatcatacttgtataaagaagcgcgctgaatcag |
419 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6817735 |
tattgctctttattttatccatgttatcaccaccatgatcttcaacatgaggacttggtcctgtaaaatcatacttgtataaagaagcgcactgaatcag |
6817834 |
T |
|
| Q |
420 |
ttcattcattacttgcttagcccgaataagttttttcttcctcctttggattttctctacc |
480 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6817835 |
ttcattcattacttgcttagcccgaataagttttttcttcctcctttggattttctctacc |
6817895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 22 - 480
Target Start/End: Original strand, 6831951 - 6832409
Alignment:
| Q |
22 |
acacgccaaggcttaaaccgtctataagtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacgaaatgcagtttccttgattatactcc |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |
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| T |
6831951 |
acacgccaaggcttaaacctcctataagtagcagcaagatgcaatgcactgttaccattgatatcaacttgacgaaatgcagtctctttgattacactcc |
6832050 |
T |
|
| Q |
122 |
tcctatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaatagccacagggta |
221 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
6832051 |
tcttatttaacaaactgtatacatgaggttgcctattctctatggccaaaagaacaacattcttgttctgactgtccacatcgtgaatagccacagggta |
6832150 |
T |
|
| Q |
222 |
cacatctagaatcttttcaatcatttcagtcactcccatctttgctgcaattaaaataggtgacactgttctccttttctcaatagcctcattttctgta |
321 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||| |
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| T |
6832151 |
catgtctagaatattttcaatcatttcagtcactcccatctttgctgcaattaaaattggtgacaccattctccttttctcaataacttcattttctgta |
6832250 |
T |
|
| Q |
322 |
tagctctttattttacccatgttatcaccaccatgatcttcaacatgaggacttggtcctgtaaaatcatacttgtataaagaagcgcgctgaatcagtt |
421 |
Q |
| |
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| ||||||||||||| | |||| | |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6832251 |
ttgctctttattttatctatgtcaccaccaccaagttcttcaacacgaggacttggtcctgtaaaatcatacttgtataaagaagcgtgctgaatcagtt |
6832350 |
T |
|
| Q |
422 |
cattcattacttgcttagcccgaataagttttttcttcctcctttggattttctctacc |
480 |
Q |
| |
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||||||| ||||||||||||||||| |||||| |||| |||||||||||||||||||| |
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|
| T |
6832351 |
cattcatcacttgcttagcccgaatgtgtttttccttcttcctttggattttctctacc |
6832409 |
T |
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