View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_18 (Length: 492)
Name: NF16515_low_18
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 25605740 - 25606218
Alignment:
| Q |
1 |
accaagctggtatctgccttactcaatgacaaaaatgtcttaaaattctttcttgctaacatagggaacatttgattagctagtagacagtctcaaattn |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25605740 |
accaagctggtatatgccttactcaatgacaaaaatgtcttaaaattctttcttgctaacatagggaacatttgattagctagtagacagtctcaaatta |
25605839 |
T |
|
| Q |
101 |
nnnnnn-gtgttatcaattagactcaatattttagttctaaacccaccaaatctattagatacaactattatatctgatgtaattcctaattataatacc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25605840 |
aaaaaaagtgttatcaattagactcaatattttagttctaaacccaccaaatctattagatacaactattatatctgatgtaattcctaattataatacc |
25605939 |
T |
|
| Q |
200 |
attccctaagacttaccttatataatttaccagaacacatgattatggagggaacaat-nnnnnnnnngtataataccaagtaaaataccaaacatataa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25605940 |
attccctaagacttaccttatataatttaccagaacacatgattatggagggaacaataaaaaaaaaagtataataccaagtaaaataccaaacatataa |
25606039 |
T |
|
| Q |
299 |
ttatcatatcaaactgagaccctgttcggataaaaatcttgattaacttataagtacgtttatgtataagcgatttctacaacaaagat-aaaaaagccg |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25606040 |
ttatcatatcaaactgagaccctgttcggataaacatcttgattaacttctaagtacgtttatgtataagcgatttctacaacaaagataaaaaaagccg |
25606139 |
T |
|
| Q |
398 |
catcannnnnnnnnnnnnggaatacaagtcacatcgtttgtgagagcctatgaaaataagttgaaagtcgtgttataagt |
477 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25606140 |
catca-ttttttctttttggaatacaagtcacatcgtttgtgagagcctatgaaaataagttgaaagtcgtgttataagt |
25606218 |
T |
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