View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_low_19 (Length: 484)

Name: NF16515_low_19
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_low_19
NF16515_low_19
[»] chr5 (5 HSPs)
chr5 (214-470)||(15216553-15216810)
chr5 (1-146)||(15216340-15216485)
chr5 (280-361)||(8151133-8151215)
chr5 (217-330)||(23418414-23418528)
chr5 (215-331)||(33793081-33793198)
[»] chr4 (6 HSPs)
chr4 (215-361)||(54273444-54273592)
chr4 (268-354)||(10777940-10778027)
chr4 (378-447)||(23805170-23805240)
chr4 (378-447)||(6355197-6355267)
chr4 (272-342)||(35232874-35232945)
chr4 (401-442)||(11694720-11694761)
[»] chr3 (5 HSPs)
chr3 (262-361)||(32072982-32073081)
chr3 (400-442)||(25979640-25979682)
chr3 (371-439)||(21080604-21080673)
chr3 (371-439)||(21085193-21085262)
chr3 (379-442)||(17914474-17914538)
[»] chr6 (4 HSPs)
chr6 (260-361)||(6267418-6267520)
chr6 (214-361)||(15837209-15837356)
chr6 (373-442)||(8754286-8754356)
chr6 (401-435)||(13737665-13737699)
[»] chr2 (6 HSPs)
chr2 (292-361)||(16638427-16638496)
chr2 (389-447)||(23479762-23479821)
chr2 (402-441)||(39529780-39529819)
chr2 (371-439)||(45469533-45469602)
chr2 (371-439)||(45702558-45702627)
chr2 (378-425)||(6695362-6695410)
[»] chr8 (6 HSPs)
chr8 (215-356)||(45366779-45366922)
chr8 (399-447)||(9741521-9741569)
chr8 (215-283)||(11219469-11219537)
chr8 (280-361)||(35687916-35687998)
chr8 (260-331)||(13325747-13325819)
chr8 (398-442)||(14005778-14005822)
[»] chr7 (1 HSPs)
chr7 (301-358)||(20482887-20482945)
[»] chr1 (7 HSPs)
chr1 (403-445)||(14341550-14341592)
chr1 (215-316)||(26344569-26344671)
chr1 (371-439)||(26588736-26588805)
chr1 (324-361)||(33770146-33770183)
chr1 (271-335)||(50311133-50311198)
chr1 (214-283)||(25559532-25559601)
chr1 (403-447)||(46840556-46840600)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 214 - 470
Target Start/End: Original strand, 15216553 - 15216810
Alignment:
Q  214 tgcatttggttcggatgtattcggatcannnnnnnactcaaccatgtggttcggttcggtttgcggttttatgttagcaacccaacaaaaccacaacata 313  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||||||    
T  15216553 tgcatttggttcggatgtattcggatcatttttttactcaaccatgtggttcggttcggtttgcggttttatgttagcagccaaacaaaatcgcaacata 15216652  T
Q  314 agagaaacagtaattaaacttaggtcaccaacctagtactcatagaaaggacatgttttcttcagaagtttgtcatgtcctctct-ccagtctattttct 412  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  15216653 agagaaacactaattaaacttaggtcaccaacctagtattcatagaaaggacatgttttcttcagaagtttgtcatgatctctctcccagtctattttct 15216752  T
Q  413 tttcttcttcaaggctcccacatgtatcatctcttataaaaaatattgaaatgttttt 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15216753 tttcttcttcaaggctcccacatgtatcatctcttataaaaaatattgaaatgttttt 15216810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 15216340 - 15216485
Alignment:
Q  1 caagctgcagactgcgatcacaaaggatacgtgggaccaacgaatggccatgactctttaaccactcaaatgaaatattaaaaacttccaagctttcacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  15216340 caagctgcagactgcgatcacaaaggatacgtgggaccaacgaatggccatgactatttaaccactcaaattaaatattaaaaacttccaagctttcacg 15216439  T
Q  101 ttaaaattgattaaacttgnnnnnnntggagttaaattaacggtgt 146  Q
    |||||||||||||||||||       ||| ||||||||||||||||    
T  15216440 ttaaaattgattaaacttgaaaaaaatggggttaaattaacggtgt 15216485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 8151215 - 8151133
Alignment:
Q  280 ttttatgttagcaacccaacaaaaccacaacataagagaaacagtaattaaacttaggtca-ccaacctagtactcatagaaa 361  Q
    |||||| ||||||| | ||| ||| | |||||||||||||| | |||||||||||  |||| |||||||||||||||||||||    
T  8151215 ttttattttagcaatcgaaccaaatcgcaacataagagaaatactaattaaacttgtgtcacccaacctagtactcatagaaa 8151133  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 330
Target Start/End: Complemental strand, 23418528 - 23418414
Alignment:
Q  217 atttggttcggatgtattcggatcannnnnnnactcaaccatgtggttcggttcggtttgcgg-ttttatgttagcaacccaacaaaaccacaacataag 315  Q
    ||||||||||||| |||||||||||       ||||||||  |||||| ||||||||||| || |||||| ||| | ||| ||| ||||| |||||||||    
T  23418528 atttggttcggatatattcggatcattttattactcaaccgcgtggtttggttcggtttgaggtttttattttaccgaccgaaccaaaccgcaacataag 23418429  T
Q  316 agaaacagtaattaa 330  Q
    | ||||| |||||||    
T  23418428 aaaaacattaattaa 23418414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 331
Target Start/End: Complemental strand, 33793198 - 33793081
Alignment:
Q  215 gcatttggttcggatgtattcggatcannnnnnnactcaaccatgtggttcggttcggtttgcggtttt-atgttagcaacccaacaaaaccacaacata 313  Q
    ||||||||||||||||||||| |||||       |||||||| ||||||| | || ||||||||||||| || ||| ||||| ||| ||||  ||| |||    
T  33793198 gcatttggttcggatgtattcagatcatttttttactcaaccgtgtggtttgatttggtttgcggttttgattttatcaaccaaaccaaactgcaatata 33793099  T
Q  314 agagaaacagtaattaaa 331  Q
    ||| ||||| ||||||||    
T  33793098 agaaaaacactaattaaa 33793081  T

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Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 215 - 361
Target Start/End: Original strand, 54273444 - 54273592
Alignment:
Q  215 gcatttggttcggatgtattcggatcannnnnnn-actcaaccatgtggttcggttcggtttgcggtttt-atgttagcaacccaacaaaaccacaacat 312  Q
    |||||||||||||||||||||||||||        ||||||||   || ||||||| ||||||||||||| || ||||||||| ||| ||||| ||||||    
T  54273444 gcatttggttcggatgtattcggatcattttttttactcaaccgcatgattcggtttggtttgcggtttttattttagcaaccgaaccaaaccgcaacat 54273543  T
Q  313 aagagaaacagtaattaaacttaggtcaccaacctagtactcatagaaa 361  Q
    |||||||||| ||| ||||||||| |||||| ||||||||||| |||||    
T  54273544 aagagaaacactaactaaacttagttcaccagcctagtactcagagaaa 54273592  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 10777940 - 10778027
Alignment:
Q  268 ttcggtttgcggtttt-atgttagcaacccaacaaaaccacaacataagagaaacagtaattaaacttaggtcaccaacctagtactc 354  Q
    ||||| |||||||||| || ||||||||| ||| |||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||    
T  10777940 ttcggcttgcggtttttattttagcaaccgaaccaaaccacaacataagataaacactaattaaacttagatcacaaacctagtactc 10778027  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 378 - 447
Target Start/End: Original strand, 23805170 - 23805240
Alignment:
Q  378 gaagtttgtcatgtcctctct-ccagtctattttcttttcttcttcaaggctcccacatgtatcatctctt 447  Q
    |||||||||| |||||||| | || ||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  23805170 gaagtttgtcttgtcctcttttccggtctattttctttccttcttcaaggcttccacatgtatcatttctt 23805240  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 447
Target Start/End: Original strand, 6355197 - 6355267
Alignment:
Q  378 gaagtttgtcatgtcctctct-ccagtctattttcttttcttcttcaaggctcccacatgtatcatctctt 447  Q
    ||||| |||| |||| ||||| || |||||||||||||| ||||||||||||||  |||||||||||||||    
T  6355197 gaagtctgtcttgtcttctcttccggtctattttcttttgttcttcaaggctcctgcatgtatcatctctt 6355267  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 35232874 - 35232945
Alignment:
Q  272 gtttgcggtttt-atgttagcaacccaacaaaaccacaacataagagaaacagtaattaaacttaggtcacc 342  Q
    |||||||||||| || ||| ||||| ||| ||||| |||||||||| ||||| |||||||||||| ||||||    
T  35232874 gtttgcggtttttattttatcaaccgaactaaaccgcaacataagaaaaacactaattaaacttatgtcacc 35232945  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 11694761 - 11694720
Alignment:
Q  401 agtctattttcttttcttcttcaaggctcccacatgtatcat 442  Q
    |||||| ||||||| ||||| |||||||||||||||||||||    
T  11694761 agtctactttctttccttctacaaggctcccacatgtatcat 11694720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 361
Target Start/End: Original strand, 32072982 - 32073081
Alignment:
Q  262 gttcggttcggtttgcggttttatgttagcaacccaacaaaaccacaacataagagaaacagtaattaaacttaggtcaccaacctagtactcatagaaa 361  Q
    |||||||||||||||||||||||| ||||||||  ||| ||| | ||||| |||| ||||| |||||||| ||||| ||| |||||||||||||||||||    
T  32072982 gttcggttcggtttgcggttttattttagcaactgaaccaaatcgcaacacaagaaaaacactaattaaatttaggacacaaacctagtactcatagaaa 32073081  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 442
Target Start/End: Complemental strand, 25979682 - 25979640
Alignment:
Q  400 cagtctattttcttttcttcttcaaggctcccacatgtatcat 442  Q
    ||||||||||||||| |||||||||||||| | ||||||||||    
T  25979682 cagtctattttctttccttcttcaaggctctctcatgtatcat 25979640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 21080604 - 21080673
Alignment:
Q  371 ttcttcagaagtttgtcatgtcctctct-ccagtctattttcttttcttcttcaaggctcccacatgtat 439  Q
    |||||| ||| |||||| |||||||| | || ||||||||||||| |||||||||||||||  |||||||    
T  21080604 ttcttccgaattttgtcttgtcctctttaccggtctattttctttccttcttcaaggctcctgcatgtat 21080673  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 21085193 - 21085262
Alignment:
Q  371 ttcttcagaagtttgtcatgtcctctct-ccagtctattttcttttcttcttcaaggctcccacatgtat 439  Q
    |||||| ||| |||||| |||||||| | || ||||||||||||| |||||||||||||||  |||||||    
T  21085193 ttcttccgaattttgtcttgtcctctttaccggtctattttctttccttcttcaaggctcctgcatgtat 21085262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 442
Target Start/End: Complemental strand, 17914538 - 17914474
Alignment:
Q  379 aagtttgtcatgtcctctct-ccagtctattttcttttcttcttcaaggctcccacatgtatcat 442  Q
    |||| |||| |||||||||| || ||||||||||||| ||||||||| |||||| || |||||||    
T  17914538 aagtctgtcttgtcctctcttccggtctattttctttccttcttcaaagctcccgcaggtatcat 17914474  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 260 - 361
Target Start/End: Complemental strand, 6267520 - 6267418
Alignment:
Q  260 tggttcggttcggtttgcggtttt-atgttagcaacccaacaaaaccacaacataagagaaacagtaattaaacttaggtcaccaacctagtactcatag 358  Q
    ||||| |||| ||||||||||||| || |||  |||| ||| ||||| |||||||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  6267520 tggtttggtttggtttgcggtttttattttaaaaaccaaaccaaaccgcaacataagagaaacattaactaaacttaggtcacaaacctagtactcatag 6267421  T
Q  359 aaa 361  Q
    |||    
T  6267420 aaa 6267418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 214 - 361
Target Start/End: Original strand, 15837209 - 15837356
Alignment:
Q  214 tgcatttggttcggatgtattcggatcannnnnnnactcaaccatgtggttcggttcggtttgcggtttt-atgttagcaacccaacaaaaccacaacat 312  Q
    ||||||||||||||||| ||| ||||||        || |||||  |||||||||| |||||| |||||| || ||||||||| ||| ||||| ||||||    
T  15837209 tgcatttggttcggatgaatttggatcatatttttccttaaccacatggttcggtttggtttgtggtttttattttagcaaccgaaccaaaccgcaacat 15837308  T
Q  313 aagagaaacagtaattaaacttaggtcaccaacctagtactcatagaaa 361  Q
    |||| ||||| ||||||||||||||  | |||||||||| |||||||||    
T  15837309 aagaaaaacattaattaaacttaggata-caacctagtattcatagaaa 15837356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 8754356 - 8754286
Alignment:
Q  373 cttcagaagtttgtcatgtcctctct-ccagtctattttcttttcttcttcaaggctcccacatgtatcat 442  Q
    |||| ||||| |||| |||||||||| || |||||||||||||  ||||||||||||||| || |||||||    
T  8754356 cttctgaagtctgtcttgtcctctcttccggtctattttctttctttcttcaaggctcccgcaggtatcat 8754286  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 435
Target Start/End: Complemental strand, 13737699 - 13737665
Alignment:
Q  401 agtctattttcttttcttcttcaaggctcccacat 435  Q
    |||||||||||||| ||||||||||||||||||||    
T  13737699 agtctattttctttccttcttcaaggctcccacat 13737665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 16638496 - 16638427
Alignment:
Q  292 aacccaacaaaaccacaacataagagaaacagtaattaaacttaggtcaccaacctagtactcatagaaa 361  Q
    |||| ||||||||| |||||||||||||||| |||||||| |||||||||  ||||||||||| ||||||    
T  16638496 aaccaaacaaaaccgcaacataagagaaacactaattaaatttaggtcacagacctagtactcctagaaa 16638427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 23479762 - 23479821
Alignment:
Q  389 tgtcctctctcc-agtctattttcttttcttcttcaaggctcccacatgtatcatctctt 447  Q
    |||||||||||| | |||||||||||| |||||||||||||||  |||||||||| ||||    
T  23479762 tgtcctctctcccaatctattttctttccttcttcaaggctcctgcatgtatcatttctt 23479821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 441
Target Start/End: Complemental strand, 39529819 - 39529780
Alignment:
Q  402 gtctattttcttttcttcttcaaggctcccacatgtatca 441  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  39529819 gtctactttctttccttcttcaaggctcccacatgtatca 39529780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 45469602 - 45469533
Alignment:
Q  371 ttcttcagaagtttgtcatgtcctctct-ccagtctattttcttttcttcttcaaggctcccacatgtat 439  Q
    |||||| ||||||| ||||||||||||| || || || ||||||| ||||||||||||||| ||| ||||    
T  45469602 ttcttctgaagtttttcatgtcctctcttccggtttactttctttccttcttcaaggctcctacaggtat 45469533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 45702627 - 45702558
Alignment:
Q  371 ttcttcagaagtttgtcatgtcctctct-ccagtctattttcttttcttcttcaaggctcccacatgtat 439  Q
    |||||| ||||| ||||||||||||||| || || || ||||||| ||||||||||||||| ||| ||||    
T  45702627 ttcttctgaagtctgtcatgtcctctcttccggtttactttctttccttcttcaaggctcctacaggtat 45702558  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 425
Target Start/End: Original strand, 6695362 - 6695410
Alignment:
Q  378 gaagtttgtcatgtcctctct-ccagtctattttcttttcttcttcaag 425  Q
    ||||| ||||||||||||||| ||||||||| || ||||||||||||||    
T  6695362 gaagtgtgtcatgtcctctctaccagtctatcttgttttcttcttcaag 6695410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 356
Target Start/End: Complemental strand, 45366922 - 45366779
Alignment:
Q  215 gcatttggttcggatgtattcggatcannnnnnnactcaaccatgtggttcggttcggtttgcggtttt-atgttagcaacccaacaaaaccacaacata 313  Q
    ||||||||||||||||||||||| |||       ||||||| |  | ||| ||||||||||| | |||| || ||| ||||| ||| ||||| |  ||||    
T  45366922 gcatttggttcggatgtattcgggtcatttttttactcaacaacatagtttggttcggtttgtgatttttattttaacaaccaaactaaaccgcggcata 45366823  T
Q  314 agagaaacagtaattaaa-cttaggtcaccaacctagtactcat 356  Q
    ||||||||| |||||||| |||||||||||| |||| |||||||    
T  45366822 agagaaacactaattaaaacttaggtcaccatcctaatactcat 45366779  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 447
Target Start/End: Complemental strand, 9741569 - 9741521
Alignment:
Q  399 ccagtctattttcttttcttcttcaaggctcccacatgtatcatctctt 447  Q
    ||||| |||||||||| |||||||||||| ||||||||||| |||||||    
T  9741569 ccagtttattttctttccttcttcaaggcccccacatgtataatctctt 9741521  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 11219537 - 11219469
Alignment:
Q  215 gcatttggttcggatgtattcggatcannnnnnnactcaaccatgtggttcggttcggtttgcggtttt 283  Q
    |||||||||||||||||||||||||||       |||||| ||  ||||| ||||||||||||||||||    
T  11219537 gcatttggttcggatgtattcggatcatttttttactcaatcacatggtttggttcggtttgcggtttt 11219469  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 35687916 - 35687998
Alignment:
Q  280 ttttatgttagcaacccaacaaaaccacaacataa-gagaaacagtaattaaacttaggtcaccaacctagtactcatagaaa 361  Q
    |||||| |||| |||| ||| ||||| |||||||| || ||||| ||||||||||||||  || |||| ||||||||||||||    
T  35687916 ttttattttagtaaccgaaccaaaccgcaacataaagaaaaacactaattaaacttaggatacaaaccaagtactcatagaaa 35687998  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 13325819 - 13325747
Alignment:
Q  260 tggttcggttcggtttgcggtttt-atgttagcaacccaacaaaaccacaacataagagaaacagtaattaaa 331  Q
    ||||| |||||||||||||||||| || ||| ||||| ||| ||||| ||| |||||| ||||| ||||||||    
T  13325819 tggtttggttcggtttgcggttttgattttatcaaccaaaccaaaccgcaatataagaaaaacaataattaaa 13325747  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 14005778 - 14005822
Alignment:
Q  398 tccagtctattttcttttcttcttcaaggctcccacatgtatcat 442  Q
    ||||||||||||||||| ||||||||| |||| |||| |||||||    
T  14005778 tccagtctattttctttccttcttcaaagctctcacaagtatcat 14005822  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 20482887 - 20482945
Alignment:
Q  301 aaaccacaacataagagaaacagtaattaaacttaggtcac-caacctagtactcatag 358  Q
    ||||| ||| |||||||||||| ||||||||||||  |||| |||||||||||||||||    
T  20482887 aaaccgcaatataagagaaacactaattaaacttatatcactcaacctagtactcatag 20482945  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 14341592 - 14341550
Alignment:
Q  403 tctattttcttttcttcttcaaggctcccacatgtatcatctc 445  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||    
T  14341592 tctactttctttcctttttcaaggctcccacatgtatcatctc 14341550  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 316
Target Start/End: Original strand, 26344569 - 26344671
Alignment:
Q  215 gcatttggttcggatgtattcggatcannnnnnnactcaaccatgtggttcggttcggtttgcggtttt-atgttagcaacccaacaaaaccacaacata 313  Q
    |||||||||||||||||||||||||||       ||||||||   ||||| |||||||||||| ||||| || ||| ||||| ||| ||||| ||| |||    
T  26344569 gcatttggttcggatgtattcggatcaattttttactcaaccgcatggtttggttcggtttgcagttttgattttaccaaccgaaccaaaccgcaatata 26344668  T
Q  314 aga 316  Q
    |||    
T  26344669 aga 26344671  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 26588736 - 26588805
Alignment:
Q  371 ttcttcagaagtttgtcatgtcctctctcc-agtctattttcttttcttcttcaaggctcccacatgtat 439  Q
    |||||| |||||  ||||||||||||||   |||||||||| |||||||||||||||||||  |||||||    
T  26588736 ttcttctgaagtaggtcatgtcctctcttttagtctattttgttttcttcttcaaggctcctgcatgtat 26588805  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 33770183 - 33770146
Alignment:
Q  324 taattaaacttaggtcaccaacctagtactcatagaaa 361  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  33770183 taattaaacgtaggtcacaaacctagtactcatagaaa 33770146  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 50311198 - 50311133
Alignment:
Q  271 ggtttgcggtttt-atgttagcaacccaacaaaaccacaacataagagaaacagtaattaaactta 335  Q
    ||||||||||||| || ||||||||| ||| ||||  |||||||| ||||||| ||||||||||||    
T  50311198 ggtttgcggtttttattttagcaaccgaaccaaactgcaacataaaagaaacactaattaaactta 50311133  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 25559532 - 25559601
Alignment:
Q  214 tgcatttggttcggatgtattcggatcannnnnnnactcaaccatgtggttcggttcggtttgcggtttt 283  Q
    |||||||||||||||| |||||||||||       |||||||| | ||||| ||||||||||| ||||||    
T  25559532 tgcatttggttcggatatattcggatcatttttttactcaaccgtatggtttggttcggtttgtggtttt 25559601  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 447
Target Start/End: Original strand, 46840556 - 46840600
Alignment:
Q  403 tctattttcttttcttcttcaaggctcccacatgtatcatctctt 447  Q
    |||||||||| |  |||||||||||||||||||||||||| ||||    
T  46840556 tctattttctctctttcttcaaggctcccacatgtatcatttctt 46840600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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