View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_low_2 (Length: 704)

Name: NF16515_low_2
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_low_2
NF16515_low_2
[»] chr8 (29 HSPs)
chr8 (157-704)||(45457197-45457729)
chr8 (17-150)||(45456959-45457092)
chr8 (148-245)||(25143966-25144059)
chr8 (149-204)||(14880396-14880451)
chr8 (149-204)||(23702333-23702388)
chr8 (27-150)||(27545544-27545666)
chr8 (27-150)||(25144130-25144251)
chr8 (25-149)||(41487201-41487326)
chr8 (24-76)||(521524-521576)
chr8 (106-150)||(30539071-30539115)
chr8 (27-151)||(41487397-41487520)
chr8 (25-80)||(20228232-20228287)
chr8 (25-78)||(9762459-9762512)
chr8 (25-146)||(17070908-17071029)
chr8 (25-146)||(17577243-17577364)
chr8 (149-239)||(37813289-37813375)
chr8 (90-150)||(35213095-35213155)
chr8 (149-204)||(30539189-30539244)
chr8 (27-77)||(25896993-25897043)
chr8 (154-204)||(45177262-45177312)
chr8 (154-215)||(29657754-29657814)
chr8 (16-77)||(35795592-35795653)
chr8 (27-72)||(37263361-37263406)
chr8 (105-150)||(44101371-44101416)
chr8 (25-77)||(6807174-6807226)
chr8 (29-77)||(22192307-22192355)
chr8 (25-77)||(33298594-33298646)
chr8 (25-77)||(36688258-36688310)
chr8 (106-150)||(39889853-39889897)
[»] chr5 (31 HSPs)
chr5 (23-150)||(32391718-32391845)
chr5 (25-77)||(2974895-2974947)
chr5 (27-150)||(28446192-28446315)
chr5 (27-150)||(3333695-3333818)
chr5 (25-150)||(12406042-12406167)
chr5 (25-150)||(36798363-36798489)
chr5 (25-150)||(6130256-6130381)
chr5 (27-72)||(43098031-43098076)
chr5 (91-150)||(21066527-21066586)
chr5 (25-151)||(27904670-27904796)
chr5 (91-150)||(37897785-37897844)
chr5 (25-78)||(24779534-24779587)
chr5 (37-74)||(26702677-26702714)
chr5 (37-74)||(26972410-26972447)
chr5 (149-238)||(2974664-2974749)
chr5 (155-235)||(9852821-9852896)
chr5 (25-81)||(12406297-12406353)
chr5 (106-150)||(19340843-19340887)
chr5 (25-81)||(20512456-20512512)
chr5 (25-73)||(26562991-26563039)
chr5 (106-150)||(40276101-40276145)
chr5 (27-150)||(3999089-3999212)
chr5 (16-78)||(20630004-20630067)
chr5 (26-77)||(37897978-37898029)
chr5 (23-74)||(39574238-39574289)
chr5 (26-76)||(25910987-25911037)
chr5 (154-204)||(40276079-40276129)
chr5 (27-72)||(24405493-24405538)
chr5 (25-77)||(3333962-3334014)
chr5 (106-150)||(22300799-22300843)
chr5 (25-77)||(43098285-43098337)
[»] chr3 (36 HSPs)
chr3 (18-150)||(43747273-43747405)
chr3 (27-150)||(4474257-4474378)
chr3 (25-148)||(25154370-25154494)
chr3 (22-81)||(27178138-27178197)
chr3 (25-75)||(28944228-28944278)
chr3 (25-77)||(28712722-28712774)
chr3 (17-141)||(17773162-17773287)
chr3 (17-141)||(19074463-19074588)
chr3 (25-81)||(20432191-20432248)
chr3 (149-238)||(44436596-44436681)
chr3 (16-150)||(14340725-14340860)
chr3 (90-149)||(44436455-44436514)
chr3 (26-73)||(48348257-48348304)
chr3 (149-207)||(8024980-8025038)
chr3 (25-71)||(14349375-14349421)
chr3 (22-76)||(19404396-19404450)
chr3 (27-77)||(46226948-46226998)
chr3 (25-150)||(54718995-54719117)
chr3 (25-77)||(86825-86877)
chr3 (90-150)||(25248874-25248934)
chr3 (25-77)||(33329612-33329664)
chr3 (90-150)||(44585854-44585914)
chr3 (25-151)||(51315671-51315797)
chr3 (25-150)||(28204481-28204604)
chr3 (25-146)||(47189599-47189719)
chr3 (25-71)||(53184784-53184830)
chr3 (106-151)||(86656-86700)
chr3 (25-78)||(12759504-12759557)
chr3 (44-81)||(44433074-44433111)
chr3 (90-150)||(1814615-1814674)
chr3 (149-217)||(7218349-7218417)
chr3 (110-150)||(25902488-25902528)
chr3 (149-238)||(28944059-28944144)
chr3 (25-81)||(35359241-35359297)
chr3 (106-150)||(43586647-43586691)
chr3 (91-139)||(51315562-51315610)
[»] chr1 (27 HSPs)
chr1 (26-150)||(23891662-23891786)
chr1 (25-150)||(39642201-39642327)
chr1 (25-150)||(46573014-46573140)
chr1 (25-141)||(17760886-17761004)
chr1 (25-135)||(25085400-25085510)
chr1 (25-151)||(3377502-3377628)
chr1 (25-150)||(3377699-3377824)
chr1 (155-204)||(12961049-12961098)
chr1 (26-75)||(18632602-18632651)
chr1 (91-150)||(6569594-6569653)
chr1 (16-71)||(25486479-25486534)
chr1 (106-152)||(45739121-45739167)
chr1 (90-151)||(6569694-6569754)
chr1 (24-77)||(42924328-42924381)
chr1 (25-141)||(23220758-23220874)
chr1 (18-73)||(3612453-3612508)
chr1 (165-219)||(6320608-6320663)
chr1 (30-81)||(25085647-25085698)
chr1 (154-204)||(3612165-3612215)
chr1 (157-203)||(8301551-8301597)
chr1 (27-81)||(16874511-16874565)
chr1 (148-238)||(39642405-39642490)
chr1 (90-135)||(32295019-32295064)
chr1 (31-72)||(51251391-51251431)
chr1 (25-73)||(8009980-8010028)
chr1 (25-73)||(14978798-14978846)
chr1 (25-77)||(51250486-51250538)
[»] chr4 (38 HSPs)
chr4 (25-150)||(2653954-2654081)
chr4 (25-150)||(6207177-6207303)
chr4 (90-150)||(2837087-2837147)
chr4 (27-150)||(14449276-14449400)
chr4 (25-77)||(35383766-35383818)
chr4 (25-150)||(35393856-35393982)
chr4 (27-72)||(51362806-51362851)
chr4 (23-80)||(54983847-54983904)
chr4 (21-81)||(21957724-21957784)
chr4 (25-77)||(50769622-50769674)
chr4 (147-210)||(21597598-21597661)
chr4 (25-137)||(2181325-2181437)
chr4 (25-77)||(25909488-25909540)
chr4 (21-77)||(35615311-35615367)
chr4 (25-77)||(43074617-43074669)
chr4 (165-204)||(2180836-2180875)
chr4 (27-150)||(3658112-3658235)
chr4 (18-76)||(2016785-2016843)
chr4 (27-77)||(8965525-8965575)
chr4 (22-76)||(27978958-27979012)
chr4 (27-77)||(37831595-37831645)
chr4 (26-75)||(1420537-1420586)
chr4 (25-74)||(11824462-11824511)
chr4 (149-186)||(12719643-12719680)
chr4 (106-143)||(21451641-21451678)
chr4 (25-78)||(53924748-53924801)
chr4 (25-81)||(6207433-6207489)
chr4 (90-150)||(10059750-10059810)
chr4 (25-81)||(19909174-19909230)
chr4 (26-78)||(20118166-20118218)
chr4 (106-150)||(21871462-21871506)
chr4 (106-150)||(21927323-21927367)
chr4 (156-204)||(29697583-29697631)
chr4 (25-73)||(41148565-41148613)
chr4 (106-150)||(43074671-43074715)
chr4 (106-150)||(50769551-50769594)
chr4 (90-150)||(51362727-51362785)
chr4 (25-77)||(53312287-53312339)
[»] chr2 (34 HSPs)
chr2 (25-140)||(34679290-34679403)
chr2 (27-150)||(43028981-43029104)
chr2 (16-152)||(6510185-6510321)
chr2 (90-150)||(19206207-19206267)
chr2 (25-137)||(14489412-14489523)
chr2 (27-143)||(37431732-37431848)
chr2 (25-150)||(15023026-15023151)
chr2 (20-77)||(21358366-21358423)
chr2 (44-147)||(18224923-18225025)
chr2 (149-204)||(27489493-27489548)
chr2 (149-204)||(35718706-35718761)
chr2 (27-81)||(2609081-2609135)
chr2 (25-75)||(18709248-18709298)
chr2 (27-136)||(34761061-34761171)
chr2 (26-75)||(4925706-4925755)
chr2 (25-78)||(19399435-19399488)
chr2 (25-81)||(19895614-19895671)
chr2 (27-150)||(4576546-4576669)
chr2 (90-150)||(39918629-39918689)
chr2 (147-214)||(5362372-5362438)
chr2 (157-237)||(4925470-4925547)
chr2 (25-150)||(31827721-31827844)
chr2 (25-75)||(34679098-34679148)
chr2 (149-207)||(44617937-44617995)
chr2 (90-151)||(5470524-5470584)
chr2 (25-74)||(15022839-15022888)
chr2 (106-150)||(5470410-5470453)
chr2 (25-77)||(6592725-6592777)
chr2 (25-73)||(14943808-14943856)
chr2 (25-77)||(16043286-16043338)
chr2 (25-81)||(24472701-24472757)
chr2 (158-238)||(25411573-25411648)
chr2 (25-77)||(43028795-43028847)
chr2 (91-151)||(44617926-44617985)
[»] scaffold0248 (2 HSPs)
scaffold0248 (21-146)||(600-727)
scaffold0248 (90-151)||(470-530)
[»] chr7 (32 HSPs)
chr7 (16-78)||(23826282-23826344)
chr7 (25-150)||(4049909-4050034)
chr7 (149-204)||(17876230-17876285)
chr7 (25-137)||(14247295-14247407)
chr7 (23-77)||(3247432-3247486)
chr7 (25-78)||(3382080-3382133)
chr7 (25-81)||(36580275-36580332)
chr7 (25-77)||(6726520-6726572)
chr7 (25-81)||(11373848-11373904)
chr7 (106-150)||(35250307-35250351)
chr7 (26-72)||(15029312-15029356)
chr7 (25-148)||(17876347-17876470)
chr7 (27-78)||(23746154-23746205)
chr7 (25-151)||(28350117-28350243)
chr7 (25-80)||(44312746-44312801)
chr7 (28-77)||(21505878-21505927)
chr7 (25-74)||(48059210-48059259)
chr7 (90-150)||(5172711-5172771)
chr7 (25-77)||(45697488-45697540)
chr7 (25-150)||(18504428-18504552)
chr7 (27-81)||(19645058-19645112)
chr7 (158-219)||(45697537-45697599)
chr7 (106-143)||(10097637-10097674)
chr7 (105-150)||(19644884-19644928)
chr7 (25-70)||(21748082-21748127)
chr7 (148-204)||(19645000-19645056)
chr7 (106-150)||(20185104-20185148)
chr7 (25-77)||(20505270-20505322)
chr7 (25-77)||(21939335-21939387)
chr7 (25-81)||(28786014-28786070)
chr7 (20-80)||(28960644-28960703)
chr7 (25-80)||(35793376-35793432)
[»] chr6 (15 HSPs)
chr6 (25-150)||(10727191-10727317)
chr6 (25-150)||(12766403-12766527)
chr6 (25-77)||(30349617-30349669)
chr6 (26-141)||(28011322-28011436)
chr6 (27-81)||(1377463-1377517)
chr6 (27-81)||(1385211-1385265)
chr6 (25-150)||(33401242-33401366)
chr6 (25-77)||(3579596-3579648)
chr6 (28-151)||(10727381-10727504)
chr6 (154-202)||(1377270-1377318)
chr6 (154-202)||(1385018-1385066)
chr6 (106-140)||(2840872-2840906)
chr6 (107-149)||(17248830-17248872)
chr6 (18-77)||(17248903-17248962)
chr6 (91-151)||(32143326-32143385)
[»] scaffold0025 (1 HSPs)
scaffold0025 (27-77)||(19602-19652)
[»] scaffold0735 (1 HSPs)
scaffold0735 (24-77)||(6060-6113)
[»] scaffold0166 (1 HSPs)
scaffold0166 (25-78)||(21917-21970)
[»] scaffold0137 (2 HSPs)
scaffold0137 (16-81)||(19906-19971)
scaffold0137 (148-204)||(19974-20030)
[»] scaffold1458 (1 HSPs)
scaffold1458 (25-77)||(1472-1524)
[»] scaffold0809 (1 HSPs)
scaffold0809 (110-150)||(2839-2879)
[»] scaffold0001 (1 HSPs)
scaffold0001 (16-72)||(405060-405116)
[»] scaffold0062 (1 HSPs)
scaffold0062 (149-216)||(46273-46339)
[»] scaffold0194 (1 HSPs)
scaffold0194 (31-73)||(24900-24942)
[»] scaffold0372 (1 HSPs)
scaffold0372 (106-143)||(306-343)
[»] scaffold0515 (1 HSPs)
scaffold0515 (25-77)||(3640-3692)
[»] scaffold0306 (1 HSPs)
scaffold0306 (25-77)||(3640-3692)
[»] scaffold0015 (1 HSPs)
scaffold0015 (106-150)||(77048-77092)


Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 157 - 704
Target Start/End: Original strand, 45457197 - 45457729
Alignment:
Q  157 caaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagggggttaaaattgctattaagccattaaataatttaccatt 256  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        
T  45457197 caaaactgccacagatgcaaaatttaggggacgattttgtaattttttcttcttcttagggggttaaaactgctattaagccattaaataatttaca--- 45457293  T
Q  257 ttgttcctggattgtttagttaacaatgtaatgttttttcttttataagacaaaatatgggtgtaatgtcactctggcgttaccgccacgtactttctat 356  Q
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45457294 ---------------ttagttaacaatgtaatgttttttcttttataagacaaaatatgggtgtaatgtcactctggcgttaccgccacgtactttctat 45457378  T
Q  357 aatcaaatattattatttggaatgaaatgaaatgaggggatgaattataa---taataataataagctgtccgtccacagtgacagatcaaggagataca 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| ||||||    
T  45457379 aatcaaatattattatttggaatgaaatgaaatgaggggatgaattataataataataataataagctgtccgtccacagtgacagatcaaggtgataca 45457478  T
Q  454 atataattgattcacattaacgtgaagatcactatgtatgtctgaatgaatgcacatgttgtttgtgattgactgtgagtcaatatcataacatatgtgt 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45457479 atataattgattcacattaacgtgaagatcactatgtatgtctgaatgaatgcacatgttgtttgtgattgactgtgagtcaatatcataacatatgtgt 45457578  T
Q  554 tgatattgatatcatcatattcatacgtgtaatataatgtagtgtagtgtaggggtatatgctactgatctagttcaccatactctatctatgactctat 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45457579 tgatattgatatcatcatattcatacgtgtaatataatgtagtgtagtgtaggggtatatgctactgatctagttcaccatactctatctctgactctat 45457678  T
Q  654 agagaaaaagaaagaattaatacaagtgtgtgatcagatcatcttttcttc 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45457679 agagaaaaagaaagaattaatacaagtgtgtgatcagatcatcttttcttc 45457729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 45456959 - 45457092
Alignment:
Q  17 taaataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttaca 116  Q
    ||||||| | |||||| ||||||| | |||||||||||||||||||||||||||||  ||||||         |||||||||||||||||||||||||||    
T  45456959 taaataaggtttaataacagttttcgccccctaacttttacgaagttgtgattttgatccctaa-aaaaaaaactacaaaaccaccctttaagttttaca 45457057  T
Q  117 attgtagcagttttgg-ccccccaagaccaatttt 150  Q
    |||||||||||||||| |||||||| |||||||||    
T  45457058 attgtagcagttttggcccccccaaaaccaatttt 45457092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 25144059 - 25143966
Alignment:
Q  148 tttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagggggttaaaattgctattaagccattaaat 245  Q
    |||||| |||||||| ||||||||||||||| |||| || |||||||||| ||||||    ||||||||||| ||||| | |||||||||||| ||||    
T  25144059 tttggatgccaaaactgccacagatgcaaaacttagtggccaattttgtagtttttt----ttcttagggggctaaaactactattaagccataaaat 25143966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 14880451 - 14880396
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| || ||||||    
T  14880451 ttgggggccaaaactgccacagatgcaaaatttaggggacaattttatagtttttt 14880396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 23702333 - 23702388
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    |||||||||||||| | |||| |||||||| |||||||||||||||||||||||||    
T  23702333 ttggaggccaaaactgtcacaaatgcaaaacttaggggacaattttgtaatttttt 23702388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 27545666 - 27545544
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagcag 126  Q
    |||||||| ||||||| ||||||||| | ||||||||| ||||||||||||  |         ||||||||| | ||  |||||||||||||||||||||    
T  27545666 ttaatagcggtttttgccccctaactatcacgaagttgcgattttggccccctaagaaaaaaactacaaaactatcccctaagttttacaattgtagcag 27545567  T
Q  127 ttttggccccccaagaccaatttt 150  Q
    ||||||| ||||||| ||||||||    
T  27545566 ttttggc-ccccaaggccaatttt 27545544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 25144251 - 25144130
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagcag 126  Q
    ||||||||| |||| | | |||||| || ||||||||| |||||| |||||||||        ||||||||||||||  |||||||| ||||||| |||     
T  25144251 ttaatagcaattttcgcctcctaacattcacgaagttgcgattttagcccctaagaaaaaa--ctacaaaaccaccccctaagttttgcaattgttgcaa 25144154  T
Q  127 ttttggccccccaagaccaatttt 150  Q
    ||||||||||||||| ||||||||    
T  25144153 ttttggccccccaaggccaatttt 25144130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 149
Target Start/End: Original strand, 41487201 - 41487326
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc-taagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| | |||| || ||| ||||||||| ||||||| |||| ||||        |||||||||| |||  |||||||| ||| |||||    
T  41487201 gcttaatagcagttttcgcccccgaattttcacgaagttgcgattttgaccccctaagaaacaaaactacaaaaccgccccctaagttttgcaactgtag 41487300  T
Q  124 cagttttggccccccaagaccaattt 149  Q
    ||||||||||| |||||| |||||||    
T  41487301 cagttttggccgcccaaggccaattt 41487326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 521524 - 521576
Alignment:
Q  24 agcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggccc 76  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||    
T  521524 agcttaatagcagttttcgtcccctcacttttacgacgttgtgattttagccc 521576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 30539071 - 30539115
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||    
T  30539071 taagttttacaactgtagcagttttggccccccaaggccaatttt 30539115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 41487520 - 41487397
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagcag 126  Q
    |||||||||||||| | || ||||||||| | |||||| |||||| |||| ||||        |||||||||| |||  |||||||| ||| |||||| |    
T  41487520 ttaatagcagttttagccctctaacttttccaaagttgcgattttagcccttaagaaaaaaaactacaaaaccgccccctaagttttgcaactgtagctg 41487421  T
Q  127 ttttggccccccaagaccaattttg 151  Q
    ||||||| |||||||||||||||||    
T  41487420 ttttggc-ccccaagaccaattttg 41487397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 20228232 - 20228287
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaa 80  Q
    |||||||| ||||||| ||| ||||||||||||||||||| ||||||| |||||||    
T  20228232 gcttaataacagttttcgtctcctaacttttacgaagttgcgattttgacccctaa 20228287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 9762512 - 9762459
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccct 78  Q
    ||||||||||| |||| | | ||||||||||||||||||| |||||||||||||    
T  9762512 gcttaatagcaattttcgccacctaacttttacgaagttgcgattttggcccct 9762459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 17070908 - 17071029
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    |||||||||||||||| | ||| ||||||| ||||||||| ||||||||||||  |         | |||||||||  |  |||||||| ||| ||||||    
T  17070908 gcttaatagcagttttcgccccttaactttcacgaagttgcgattttggccccctaaaaaaaaaacaacaaaaccattccctaagttttgcaactgtagc 17071007  T
Q  125 agttttggccccccaagaccaa 146  Q
    ||||||||||||||||| ||||    
T  17071008 agttttggccccccaaggccaa 17071029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 17577364 - 17577243
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    |||||||||||||||| | ||| ||||||| ||||||||| ||||||||||||  |         | |||||||||  |  |||||||| ||| ||||||    
T  17577364 gcttaatagcagttttcgccccttaactttcacgaagttgcgattttggccccctaaaaaaaaaacaacaaaaccattccctaagttttgcaactgtagc 17577265  T
Q  125 agttttggccccccaagaccaa 146  Q
    ||||||||||||||||| ||||    
T  17577264 agttttggccccccaaggccaa 17577243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 37813289 - 37813375
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagggggttaaaattgctattaagcca 239  Q
    |||| ||||||||| ||||||||||||||| ||||||| |  ||||||| ||||||    ||||||||||| | ||| |||||||||||||    
T  37813289 ttgggggccaaaactgccacagatgcaaaacttagggggcggttttgtagtttttt----ttcttagggggctgaaactgctattaagcca 37813375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 35213095 - 35213155
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||||  ||| ||||||||| ||| |||| ||||||||||||||||| |||||||||    
T  35213095 ctacaaaactgccccttaagttttgcaactgtaacagttttggccccccaataccaatttt 35213155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 30539189 - 30539244
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    |||| ||||||||| ||||||||||||||| |||||||||  ||||||| ||||||    
T  30539189 ttgggggccaaaactgccacagatgcaaaacttaggggacggttttgtagtttttt 30539244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 25896993 - 25897043
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||| | |||||||||||| | |||||| ||||||||||||    
T  25896993 ttaatagcagttttagccccctaactttttcaaagttgcgattttggcccc 25897043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 45177312 - 45177262
Alignment:
Q  154 ggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    ||||||||| | ||||||||||||| ||||||||| |||||||| ||||||    
T  45177312 ggccaaaactgtcacagatgcaaaacttaggggacgattttgtagtttttt 45177262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 29657814 - 29657754
Alignment:
Q  154 ggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttag 215  Q
    ||||||||| |||||| |||||||||||||||| |  ||||||| |||||| ||||||||||    
T  29657814 ggccaaaactgccacatatgcaaaatttagggggcggttttgtagtttttt-ttcttcttag 29657754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 35795653 - 35795592
Alignment:
Q  16 ataaataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||| ||||||| |||||||| | ||||||  ||| | ||||||||||||||||||||    
T  35795653 ataaataaggcttaattgcagttttggccccctatgtttcaagaagttgtgattttggcccc 35795592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 37263361 - 37263406
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttg 72  Q
    |||||||||||||| | ||| ||||||||||||||||| |||||||    
T  37263361 ttaatagcagttttcgccccttaacttttacgaagttgcgattttg 37263406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 44101371 - 44101416
Alignment:
Q  105 ttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    ||||||||| ||| | |||||||||||||| |||||||||||||||    
T  44101371 ttaagttttgcaactttagcagttttggcctcccaagaccaatttt 44101416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 6807174 - 6807226
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||||| |||||||| ||| |||||||  |||||||| ||||||||||||    
T  6807174 gcttaatagtagtttttgccccataactttctcgaagttgcgattttggcccc 6807226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 22192307 - 22192355
Alignment:
Q  29 aatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||| | ||| ||||||| ||||||||| ||||||||||||    
T  22192307 aatagcagttttcgccccttaactttcacgaagttgcgattttggcccc 22192355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 33298646 - 33298594
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||| ||||||||||| | | ||||||||| ||||||||| ||||||||||||    
T  33298646 gcttgatagcagttttcgcctcctaactttcacgaagttgcgattttggcccc 33298594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 36688310 - 36688258
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||||||||||||   |||||||||||| | |||||||||||||| ||||    
T  36688310 gcttaatagcagttttaaccccctaactttttcaaagttgtgattttgacccc 36688258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 39889853 - 39889897
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| ||| |||||||||||||||| ||||||| |||||||    
T  39889853 taagttttgcaactgtagcagttttggcctcccaagatcaatttt 39889897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 32391718 - 32391845
Alignment:
Q  23 aagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgta 122  Q
    |||||||||||||||||| | ||| ||||||| ||||||||||||||||||||||| |         |||||||| |||||  |||||||| ||| ||||    
T  32391718 aagcttaatagcagttttcgccccttaactttcacgaagttgtgattttggccccttaagaaaaaaactacaaaatcaccccctaagttttgcaactgta 32391817  T
Q  123 gcagttttggccccccaagaccaatttt 150  Q
    ||||||||||||||||||| ||||||||    
T  32391818 gcagttttggccccccaaggccaatttt 32391845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 2974947 - 2974895
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  2974947 gcttaatagcagtttttgccccctaactttcacgaagttgcgattttggcccc 2974895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 28446315 - 28446192
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagca 125  Q
    |||||| ||||||| ||||||||| ||||||||| |||||||||||| ||||||||        ||||||||||  ||  |||||||| ||| |||||||    
T  28446315 ttaataacagttttcgtcccctaatttttacgaaattgtgattttggtcccctaagaataaaaactacaaaaccgtcccctaagttttgcaactgtagca 28446216  T
Q  126 gttttggccccccaagaccaatttt 150  Q
    ||||||| ||||||||| |||||||    
T  28446215 gttttgg-cccccaagatcaatttt 28446192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 3333695 - 3333818
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagca 125  Q
    |||||||||||||| | ||||||||||| | ||||||| |||||||  ||||||||        ||||||||||  ||| |||||||| ||| |||||||    
T  3333695 ttaatagcagttttcgccccctaactttcatgaagttgcgattttgatcccctaagaaaaaaa-ctacaaaaccgtcctctaagttttgcaaatgtagca 3333793  T
Q  126 gttttggccccccaagaccaatttt 150  Q
    |||||||||||||||| ||||||||    
T  3333794 gttttggccccccaaggccaatttt 3333818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 12406042 - 12406167
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| | |||||||||||  | |||||| |||||||| ||||||||        |||||||||| |||  |||||||| ||| ||||     
T  12406042 gcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaagaaaactacaaaaccgccccctaagttttgcaactgta- 12406140  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    |||||||||||||||||| ||||||||    
T  12406141 cagttttggccccccaaggccaatttt 12406167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 36798489 - 36798363
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| | |||||||||||  | |||||| |||||||| ||||||||        || ||||||| |||  |||||||| ||| |||||    
T  36798489 gcttaatagcagttttagccccctaactttctcaaagttgcgattttggtcccctaagaaaaaaaactgcaaaaccgccccctaagttttgcaactgtag 36798390  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    |||||||||||||||||  ||||||||    
T  36798389 cagttttggccccccaaagccaatttt 36798363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 6130256 - 6130381
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    ||||||||||| |||| |  ||||||| || |||||||||  || ||||||| ||||        ||||||||||| ||  |||||||| ||| ||||||    
T  6130256 gcttaatagcaattttcgctccctaacattcacgaagttgcaatgttggcccataagaaaaaaaactacaaaaccatcccctaagttttgcaactgtagc 6130355  T
Q  125 agttttggccccccaagaccaatttt 150  Q
    ||||||||||||||||| ||||||||    
T  6130356 agttttggccccccaaggccaatttt 6130381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 43098031 - 43098076
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttg 72  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||    
T  43098031 ttaatagcagttttcgtcccctaacttttacgaagttgcgattttg 43098076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 21066586 - 21066527
Alignment:
Q  91 tacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    ||||||||| | | ||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  21066586 tacaaaaccgctccttaagttttgcaactgtagcagttttggccccccaaggccaatttt 21066527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 27904796 - 27904670
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc-taagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| | || ||||||||| | |||||| |||||||||||| ||||        |||||||||| |||  |||||||| || |||| |    
T  27904796 gcttaatagcagttttagccctctaactttttcaaagttgcgattttggccccgtaagaaaaaaaactacaaaaccgccccctaagttttgcacttgtgg 27904697  T
Q  124 cagttttggccccccaagaccaattttg 151  Q
    ||||||| | ||||||||||||||||||    
T  27904696 cagtttt-gtcccccaagaccaattttg 27904670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 37897785 - 37897844
Alignment:
Q  91 tacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    ||||||||| |||  |||||||| |||||||||| |||||||||||| ||||||||||||    
T  37897785 tacaaaaccgccccctaagttttgcaattgtagctgttttggcccccgaagaccaatttt 37897844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 24779587 - 24779534
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccct 78  Q
    |||||||||||||||| ||||||||||||||| |  |||| |||||||||||||    
T  24779587 gcttaatagcagttttcgtcccctaacttttatgctgttgcgattttggcccct 24779534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 26702714 - 26702677
Alignment:
Q  37 tttttgtcccctaacttttacgaagttgtgattttggc 74  Q
    |||||||||||||||||||||||||||| |||||||||    
T  26702714 tttttgtcccctaacttttacgaagttgcgattttggc 26702677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 26972447 - 26972410
Alignment:
Q  37 tttttgtcccctaacttttacgaagttgtgattttggc 74  Q
    |||||||||||||||||||||||||||| |||||||||    
T  26972447 tttttgtcccctaacttttacgaagttgcgattttggc 26972410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 2974749 - 2974664
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagggggttaaaattgctattaagcc 238  Q
    |||| ||||||||| ||||||||||||||| ||||||| |  |||||    ||||| || ||||||||||| ||||| ||||||||||||    
T  2974749 ttgggggccaaaactgccacagatgcaaaacttagggggcggttttg----tttttttttttcttagggggctaaaactgctattaagcc 2974664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 9852896 - 9852821
Alignment:
Q  155 gccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagggggttaaaattgctattaa 235  Q
    |||||||| ||||||||||||||| ||||||| | |||||||| |||||     ||||||||||||||||| || ||||||    
T  9852896 gccaaaactgccacagatgcaaaacttagggggcgattttgtagttttt-----ttcttagggggttaaaactgttattaa 9852821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 12406353 - 12406297
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    ||||||||||| |||| | |||||||||||| | |||||| ||||||||||||||||    
T  12406353 gcttaatagcaattttagccccctaactttttcaaagttgagattttggcccctaag 12406297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 19340843 - 19340887
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| ||| |||||||||||||||||||||||| |||||||    
T  19340843 taagttttgcaactgtagcagttttggccccccaagatcaatttt 19340887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 20512512 - 20512456
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    |||||||||||||||| | | | ||||||| ||||||||| ||||||||||||||||    
T  20512512 gcttaatagcagttttcgcctcttaactttcacgaagttgcgattttggcccctaag 20512456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 26562991 - 26563039
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg 73  Q
    |||||||||||||||| |||| ||||||||| | |||||||||||||||    
T  26562991 gcttaatagcagttttagtccgctaacttttccaaagttgtgattttgg 26563039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 40276101 - 40276145
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||    
T  40276101 taagttttgcaactgtagcagttttggccccccaaggccaatttt 40276145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 3999089 - 3999212
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagcag 126  Q
    |||||||||||||| | ||||||||||| ||||||||| ||||||| ||||  |         |||||||| |  | | |||||||| ||| ||||||||    
T  3999089 ttaatagcagttttcgccccctaactttcacgaagttgcgattttgaccccctaagaaaaaaactacaaaatcgacttataagttttgcaactgtagcag 3999188  T
Q  127 ttttggccccccaagaccaatttt 150  Q
    |||||||||| |||| ||||||||    
T  3999189 ttttggcccctcaaggccaatttt 3999212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 20630067 - 20630004
Alignment:
Q  16 ataaataaagcttaatagcagtttttgtc-ccctaacttttacgaagttgtgattttggcccct 78  Q
    ||||||||  ||||||||||||||| | | ||||||||||| | ||||||||||||||||||||    
T  20630067 ataaataagacttaatagcagttttagcctccctaacttttccaaagttgtgattttggcccct 20630004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 37898029 - 37897978
Alignment:
Q  26 cttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||||||||||| | |||||||||||| | |||||| ||||||||||||    
T  37898029 cttaatagcagttttagccccctaactttttcaaagttgcgattttggcccc 37897978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 39574238 - 39574289
Alignment:
Q  23 aagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggc 74  Q
    |||||||||||||||||| | || |||||||| ||||||||| |||||||||    
T  39574238 aagcttaatagcagttttcgccctctaactttcacgaagttgcgattttggc 39574289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 25911037 - 25910987
Alignment:
Q  26 cttaatagcagtttttgtcccctaacttttacgaagttgtgattttggccc 76  Q
    ||||||||||||||| | ||||||||||| ||||||||| |||||| ||||    
T  25911037 cttaatagcagttttcgccccctaactttcacgaagttgagattttagccc 25910987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 40276129 - 40276079
Alignment:
Q  154 ggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    ||||||||| || |||| ||||||| ||||||||| |||||||||||||||    
T  40276129 ggccaaaactgctacagttgcaaaacttaggggacgattttgtaatttttt 40276079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 24405493 - 24405538
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttg 72  Q
    |||||||||||||| |||||||||||||| | |||||| |||||||    
T  24405493 ttaatagcagttttagtcccctaactttttcaaagttgcgattttg 24405538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 3334014 - 3333962
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||||| |||||| | |||||||||||| | |||||| ||||||||||||    
T  3334014 gcttaatagtagttttagccccctaacttttccaaagttgcgattttggcccc 3333962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 22300843 - 22300799
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| ||| ||||||||||||||||| ||||| ||||||||    
T  22300843 taagttttgcaactgtagcagttttggccctccaaggccaatttt 22300799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 43098337 - 43098285
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||| |||||||||||||| | |||||  |||||| |||||    
T  43098337 gcttaatagcagttttagtcccctaactttttcaaagttacgatttttgcccc 43098285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 43747273 - 43747405
Alignment:
Q  18 aaataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaa 117  Q
    |||||| | |||||||||||||| ||||  ||||||||||||||||| ||||||||||||  |         |||||||| | |||  |||||||| |||    
T  43747273 aaataaggtttaatagcagttttcgtcctataacttttacgaagttgcgattttggccccctaagaaaaaaactacaaaatcgcccaataagttttgcaa 43747372  T
Q  118 ttgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||||||||||||||||||||||||||||    
T  43747373 ttgtagcagttttggccccccaagaccaatttt 43747405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 4474378 - 4474257
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc-taagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagca 125  Q
    ||||||||||||||   | ||||||||||||||||||| |||||||||||| |||          ||||||||| |||| |||||||| ||| |||||||    
T  4474378 ttaatagcagttttctcctcctaacttttacgaagttgcgattttggccccctaaaaaaaat---tacaaaaccgccctctaagttttgcaactgtagca 4474282  T
Q  126 gttttggccccccaagaccaatttt 150  Q
    |||||||||||||||||||||||||    
T  4474281 gttttggccccccaagaccaatttt 4474257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 25154494 - 25154370
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc-cctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    ||||||||||||||||   |||||||||||  | |||||||||||||| || ||||||        |||||||||| ||| ||||||||| ||| |||||    
T  25154494 gcttaatagcagttttaaccccctaactttaccaaagttgtgattttgacctcctaagaaaaaaaactacaaaaccgccccttaagttttgcaactgtag 25154395  T
Q  124 cagttttggccccccaagaccaatt 148  Q
    |||||||||||||||||| ||||||    
T  25154394 cagttttggccccccaaggccaatt 25154370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 27178138 - 27178197
Alignment:
Q  22 aaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||    
T  27178138 aaagcttaatagcagttttcgtcccctaacttttacgaagttgcgatttggccccctaag 27178197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 28944278 - 28944228
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc 75  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  28944278 gcttaatagcagtttttgtcccctaacttttactaagttgcgattttggcc 28944228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 28712774 - 28712722
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  28712774 gcttaatagcagttttcgccccctaacttttatgaagttgtgattttggcccc 28712722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 17773162 - 17773287
Alignment:
Q  17 taaataaag-cttaatagcagtttttgtcccctaacttttacgaagttgtgattttggc-ccctaagnnnnnnnnctacaaaaccaccctttaagtttta 114  Q
    ||||||||| ||||||||||||||| | ||||||||||| || |||||| ||||||||| |||||||        |||||||||| |||  ||||||||     
T  17773162 taaataaaggcttaatagcagttttcgccccctaactttcactaagttgcgattttggcaccctaaggaaaaaaactacaaaaccgccc-ctaagttttg 17773260  T
Q  115 caattgtagcagttttggccccccaag 141  Q
    ||| ||| |||||||||||||||||||    
T  17773261 caactgtggcagttttggccccccaag 17773287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 19074463 - 19074588
Alignment:
Q  17 taaataaag-cttaatagcagtttttgtcccctaacttttacgaagttgtgattttggc-ccctaagnnnnnnnnctacaaaaccaccctttaagtttta 114  Q
    ||||||||| ||||||||||||||| | ||||||||||| || |||||| ||||||||| |||||||        |||||||||| |||  ||||||||     
T  19074463 taaataaaggcttaatagcagttttcgccccctaactttcactaagttgcgattttggcaccctaaggaaaaaaactacaaaaccgccc-ctaagttttg 19074561  T
Q  115 caattgtagcagttttggccccccaag 141  Q
    ||| ||| |||||||||||||||||||    
T  19074562 caactgtggcagttttggccccccaag 19074588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 20432191 - 20432248
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaag 81  Q
    |||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||    
T  20432191 gcttaatagcagtttttgccccctaacttttacgaagttgcgactttggtcccctaag 20432248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 44436596 - 44436681
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagggggttaaaattgctattaagcc 238  Q
    |||| ||||||||| ||||||||||||||| ||||||| |  ||||||| ||||||    ||||||||||| ||||| ||||||||||||    
T  44436596 ttgggggccaaaactgccacagatgcaaaacttagggggcggttttgtagtttttt----ttcttagggggctaaaactgctattaagcc 44436681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 14340725 - 14340860
Alignment:
Q  16 ataaataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagtttta 114  Q
    |||| ||| ||||||||| |||||| | ||||||||||| ||||||||  |||||||| |||||| |        |||||||||| |||   |||||||     
T  14340725 ataattaaggcttaataggagttttcgccccctaactttcacgaagttacgattttggtcccctacgaataaaaactacaaaaccgccccacaagttttg 14340824  T
Q  115 caattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||||||||||||||| |||||  ||||||||    
T  14340825 caattgtagcagttttggcctcccaaagccaatttt 14340860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 44436455 - 44436514
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaattt 149  Q
    |||||||||| |||  |||||||| ||| ||||||||||||||||||||||| |||||||    
T  44436455 ctacaaaaccgccccctaagttttgcaactgtagcagttttggccccccaaggccaattt 44436514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 48348257 - 48348304
Alignment:
Q  26 cttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg 73  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||||||    
T  48348257 cttaatagcagttttcgccccctaacttttacgaagttgcgattttgg 48348304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 8024980 - 8025038
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttctt 207  Q
    ||||||||||||||  ||||| |||||||| ||||||||| |||||||| |||||||||    
T  8024980 ttggaggccaaaactaccacatatgcaaaacttaggggacgattttgtatttttttctt 8025038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 14349421 - 14349375
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgatttt 71  Q
    |||||||||||||||| | ||||||||||||||||||||| ||||||    
T  14349421 gcttaatagcagttttcgccccctaacttttacgaagttgcgatttt 14349375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 19404396 - 19404450
Alignment:
Q  22 aaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggccc 76  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||| |||||| ||||    
T  19404396 aaagcttaataacagttttcgtcccctaactttcacgaagttgcgattttagccc 19404450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 46226998 - 46226948
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  46226998 ttaatagcagttttcgtcccctaactttcacgaagttgcgattttgacccc 46226948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 54718995 - 54719117
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttg-gcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| |||| |||||||| ||||||||| |||||||  |||||||         ||| ||||||  ||| |||||||| ||| |||||    
T  54718995 gcttaatagcagttttcgtccactaactttcacgaagttgcgattttgaacccctaa----aaaaactataaaaccgtcctctaagttttgcaactgtag 54719090  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    ||||||||||||||||||  |||||||    
T  54719091 cagttttggccccccaaggtcaatttt 54719117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 86877 - 86825
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||||| |||||| ||||||||||||| | ||||||| ||||||||||||    
T  86877 gcttaataggagttttcgtcccctaactttcatgaagttgcgattttggcccc 86825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 25248934 - 25248874
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    ||||||| || ||||||||||||| ||| ||||||||||||||||||| | | ||||||||    
T  25248934 ctacaaatccgccctttaagttttgcaactgtagcagttttggccccctagggccaatttt 25248874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 33329612 - 33329664
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||| | || |||||||||||||||||| ||||||| ||||    
T  33329612 gcttaatagcagttttcgccctctaacttttacgaagttgcgattttgacccc 33329664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 44585854 - 44585914
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||||| |||  ||| |||| ||| |||||||||||| |||||||||||||||||||    
T  44585854 ctacaaaaccgccccctaaattttgcaactgtagcagttttcgccccccaagaccaatttt 44585914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 51315797 - 51315671
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| | |||||||||||  | |||||| |||||||| ||||||||        |||||||||| |||  |||||||| ||  ||| |    
T  51315797 gcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcacctgtgg 51315698  T
Q  124 cagttttggccccccaagaccaattttg 151  Q
    ||||||||| |||||||| |||||||||    
T  51315697 cagttttgg-cccccaaggccaattttg 51315671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 28204481 - 28204604
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttg-gcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| | ||| ||||||| ||||||||| |||||||  |||||||         |||||||| | |||  ||| |||||||| |||||    
T  28204481 gcttaatagcagttttcgccccttaactttcacgaagttgcgattttgaccccctaa---aaaaaactacaaaatcgccccctaaattttacaactgtag 28204577  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    ||||||||| |||||||| ||||||||    
T  28204578 cagttttggtcccccaaggccaatttt 28204604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 47189599 - 47189719
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||| ||||||| |  |||||||||||| ||||||| |||||||| |||||||         ||| |||||| ||| ||||||||| ||| |||||    
T  47189599 gcttaataacagttttcgctccctaacttttatgaagttgcgattttggccccctaa--aaaaaaactataaaaccgccccttaagttttgcaactgtag 47189696  T
Q  124 cagttttggccccccaagaccaa 146  Q
    |||||||||||| |||| |||||    
T  47189697 cagttttggccctccaaaaccaa 47189719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 53184830 - 53184784
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgatttt 71  Q
    |||||||||||||||| |  |||||||||||||||||||| ||||||    
T  53184830 gcttaatagcagttttcgctccctaacttttacgaagttgcgatttt 53184784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 86656 - 86700
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaattttg 151  Q
    |||||||| || ||||||||||||||| ||||||||||||||||||    
T  86656 taagttttgcacttgtagcagttttgg-cccccaagaccaattttg 86700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 12759504 - 12759557
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccct 78  Q
    |||||||| ||||||||| ||||||||||| | ||| ||| |||||||||||||    
T  12759504 gcttaataacagtttttgccccctaactttcaagaaattgcgattttggcccct 12759557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 44433074 - 44433111
Alignment:
Q  44 cccctaacttttacgaagttgtgattttggcccctaag 81  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  44433074 cccctaactttcacgaagttgtgattttggctcctaag 44433111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 1814615 - 1814674
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||||||||| ||||||||| ||| | |||||||||| | |||||||| ||||||||    
T  1814615 ctacaaaaccaccccttaagttttgcaactatagcagtttttg-cccccaaggccaatttt 1814674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 7218349 - 7218417
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttaggg 217  Q
    |||| ||||||||| |||||||||| |||| ||||| |||   |||||| |||||| ||||||||||||    
T  7218349 ttgggggccaaaactgccacagatgtaaaacttaggagacggctttgtagtttttttttcttcttaggg 7218417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 25902488 - 25902528
Alignment:
Q  110 ttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||| ||| |||| |||||||||||||||||||||||||||    
T  25902488 ttttgcaactgtaacagttttggccccccaagaccaatttt 25902528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 28944144 - 28944059
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagggggttaaaattgctattaagcc 238  Q
    |||| ||||||||| || |||  ||||||| ||||||| ||||| |||| ||||||    ||||||||||| ||||| ||||||||||||    
T  28944144 ttgggggccaaaactgctacatgtgcaaaacttagggggcaattatgtagtttttt----ttcttagggggctaaaactgctattaagcc 28944059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 35359297 - 35359241
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    ||||||||| ||||||   || |||||||| |||||||||| |||||||||||||||    
T  35359297 gcttaatagtagttttcaccctctaactttcacgaagttgtaattttggcccctaag 35359241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 43586647 - 43586691
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| |||||||| | ||||||| |||||||||||||||||    
T  43586647 taagttttgcaattgtaacggttttggtcccccaagaccaatttt 43586691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 51315562 - 51315610
Alignment:
Q  91 tacaaaaccaccctttaagttttacaattgtagcagttttggcccccca 139  Q
    ||||||||| |||  |||||||| ||| |||||||||||||||||||||    
T  51315562 tacaaaaccgccccctaagttttgcaactgtagcagttttggcccccca 51315610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 23891662 - 23891786
Alignment:
Q  26 cttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagca 125  Q
    ||||||||||||||| |  |||||||||| ||||||||||||||||||||||  |         |||||||||| ||| ||||||||| ||| |||||||    
T  23891662 cttaatagcagttttcgctccctaactttcacgaagttgtgattttggccccctaagaaaaaaactacaaaaccgccccttaagttttgcaactgtagca 23891761  T
Q  126 gttttggccccccaagaccaatttt 150  Q
    ||||||||||||||||| |||||||    
T  23891762 gttttggccccccaagatcaatttt 23891786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 39642201 - 39642327
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggccc-ctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| | ||||||||||| ||||||||| ||||||||||| ||||         |||||||||| |||  |||||| | |||||||||    
T  39642201 gcttaatagcagttttcgccccctaactttcacgaagttgcgattttggccctctaaataaaaaaactacaaaaccgccccctaagttctgcaattgtag 39642300  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    |||||||||||||||||| ||||||||    
T  39642301 cagttttggccccccaaggccaatttt 39642327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 46573140 - 46573014
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||        |||||| ||  |||  |||||||| ||| |||||    
T  46573140 gcttaatagcagtttttgtcctctaacttttacgaagttgcgattttggtcccctaagaaaaaaaactacaacactgccccctaagttttgcaactgtag 46573041  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    ||||||||| ||||| ||| |||||||    
T  46573040 cagttttggtcccccgagatcaatttt 46573014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 17761004 - 17760886
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnn-ctacaaaaccaccctttaagttttacaattgta 122  Q
    |||||||||||||||| ||| | |||||||||||||||||  ||||||  ||||||||         |||||||||| ||| ||||||||| ||||||||    
T  17761004 gcttaatagcagttttcgtctcttaacttttacgaagttgcaattttgatcccctaagaaaaaaaaactacaaaaccgccccttaagttttgcaattgta 17760905  T
Q  123 gcagttttggccccccaag 141  Q
    |||||||||||||||||||    
T  17760904 gcagttttggccccccaag 17760886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 25085400 - 25085510
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    |||||||||||||||| | ||||||||||| |  |||||| ||||||| ||||||||        |||||||||| |||| |||||||||||| ||||||    
T  25085400 gcttaatagcagttttcgccccctaactttcataaagttgcgattttgacccctaagaaaaaaaactacaaaaccgccctctaagttttacaactgtagc 25085499  T
Q  125 agttttggccc 135  Q
    | |||||||||    
T  25085500 aattttggccc 25085510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 3377502 - 3377628
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| | |||||||||||| | |||||| |||||||| ||||||||        |||||||||| |||  |||||||| || |||| |    
T  3377502 gcttaatagcagttttagccccctaacttttccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatttgtgg 3377601  T
Q  124 cagttttggccccccaagaccaattttg 151  Q
    ||||||||| |||||||| |||||||||    
T  3377602 cagttttgg-cccccaaggccaattttg 3377628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 3377824 - 3377699
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    |||||||||||||||| | |||||||||||  | |||||||||||||||||||  ||        ||||||||||  ||  |||||||| ||| | ||||    
T  3377824 gcttaatagcagttttagccccctaactttcccaaagttgtgattttggccccctaggaaaaaaactacaaaaccgtcccctaagttttgcaactttagc 3377725  T
Q  125 agttttggccccccaagaccaatttt 150  Q
    ||||||||||| ||||| ||||||||    
T  3377724 agttttggccctccaaggccaatttt 3377699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 12961049 - 12961098
Alignment:
Q  155 gccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    |||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  12961049 gccaaaactgccacagttgcaaaatttaggggacaattttgtagtttttt 12961098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 18632651 - 18632602
Alignment:
Q  26 cttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc 75  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||||||||    
T  18632651 cttaatagcagttttcgccccctaacttttacgaagttgcgattttggcc 18632602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 6569594 - 6569653
Alignment:
Q  91 tacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    ||||||||| ||| | || |||| |||||||||||||||||||||||||| |||||||||    
T  6569594 tacaaaaccgcccctaaaattttgcaattgtagcagttttggccccccaaaaccaatttt 6569653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 25486534 - 25486479
Alignment:
Q  16 ataaataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgatttt 71  Q
    |||||| | |||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  25486534 ataaattaggcttaatagcagtttttgccccctaactttcacgaagttgcgatttt 25486479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 45739167 - 45739121
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaattttgg 152  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||||    
T  45739167 taagttttgcaactgtagcagttttggccccccaaggccaattttgg 45739121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 6569754 - 6569694
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaattttg 151  Q
    |||||||||| ||| |||||||||||| |||| |||||||||| ||| ||||||||||||||    
T  6569754 ctacaaaaccgccccttaagttttacatttgtggcagttttgg-ccctcaagaccaattttg 6569694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 42924328 - 42924381
Alignment:
Q  24 agcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||| |||||||| || |||||||| ||||||||||||||||| ||||    
T  42924328 agcttaatagtagtttttgccctctaactttcacgaagttgtgattttgacccc 42924381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 23220874 - 23220758
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    |||| ||||||||||| | ||||||||||||||||||||  |||||||| |||            |||||||||| |||  |||||||||||| ||||||    
T  23220874 gcttgatagcagttttcgccccctaacttttacgaagttacgattttggtcccctctgaaaaaaactacaaaaccgccccctaagttttacaactgtagc 23220775  T
Q  125 agttttggccccccaag 141  Q
    |||||||| ||||||||    
T  23220774 agttttggtcccccaag 23220758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 3612508 - 3612453
Alignment:
Q  18 aaataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg 73  Q
    |||||| |||||||||||||||| ||||||||| ||| | ||||||| ||||||||    
T  3612508 aaataaggcttaatagcagttttagtcccctaagtttcaagaagttgagattttgg 3612453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 6320663 - 6320608
Alignment:
Q  165 ccacagatgcaaaatttaggggacaattttgta-attttttcttcttcttaggggg 219  Q
    ||||||||||||||||||||||||  |||||||  |||||||||||||||| ||||    
T  6320663 ccacagatgcaaaatttaggggacggttttgtattttttttcttcttcttaagggg 6320608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 25085698 - 25085647
Alignment:
Q  30 atagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    |||||| |||| | |||||||||||| | |||||||||||||||||||||||    
T  25085698 atagcaattttagccccctaacttttccaaagttgtgattttggcccctaag 25085647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 3612215 - 3612165
Alignment:
Q  154 ggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    ||||||||| |||||| | |||||||||||||||| |||||||| ||||||    
T  3612215 ggccaaaactgccacataggcaaaatttaggggacgattttgtagtttttt 3612165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 8301551 - 8301597
Alignment:
Q  157 caaaacggccacagatgcaaaatttaggggacaattttgtaattttt 203  Q
    |||||| |||||||||||||||||||||||||  ||||||| |||||    
T  8301551 caaaactgccacagatgcaaaatttaggggacggttttgtagttttt 8301597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 16874511 - 16874565
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    ||||||||| |||| | ||||||||||||||||||||| |||| || ||||||||    
T  16874511 ttaatagcaattttcgccccctaacttttacgaagttgcgattatgacccctaag 16874565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 39642405 - 39642490
Alignment:
Q  148 tttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagggggttaaaattgctattaagcc 238  Q
    ||||| ||||||||| |||||| |||||||| ||||||| |  ||||||| ||||||     |||||||||| ||||| ||||||||||||    
T  39642405 tttgggggccaaaactgccacaaatgcaaaacttagggggcggttttgtagtttttt-----tcttagggggctaaaactgctattaagcc 39642490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 32295019 - 32295064
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccc 135  Q
    |||||||||||||   |||||||| |||||||||||||||||||||    
T  32295019 ctacaaaaccacctcctaagttttgcaattgtagcagttttggccc 32295064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 51251431 - 51251391
Alignment:
Q  31 tagcagtttttgtcccctaacttttacgaagttgtgattttg 72  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  51251431 tagcagtttttg-cccctaacttttacgaagttgcgattttg 51251391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 8010028 - 8009980
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg 73  Q
    ||||||||| |||||| | | |||||||||||||||||||| |||||||    
T  8010028 gcttaatagtagttttagcctcctaacttttacgaagttgtaattttgg 8009980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 14978798 - 14978846
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg 73  Q
    |||||||||||||||| | |||||||||||| | |||||| ||||||||    
T  14978798 gcttaatagcagttttagccccctaacttttccaaagttgcgattttgg 14978846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 51250486 - 51250538
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||| ||||||| | |||||||||||| | |||||| ||||||||||||    
T  51250486 gcttaataacagttttagccccctaactttttcaaagttgcgattttggcccc 51250538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 2653954 - 2654081
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc--taagnnnnnnnnctacaaaaccaccctttaagttttacaattgta 122  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||  ||||        ||||||||||| |   |||||||| ||| ||||    
T  2653954 gcttaatagcagtttttgcctcctaacttttacgaagttgcgattttggcccccttaagataaaaaactacaaaaccatctcctaagttttgcaactgta 2654053  T
Q  123 gcagttttggccccccaagaccaatttt 150  Q
    ||||||||||||||||||  ||||||||    
T  2654054 gcagttttggccccccaaagccaatttt 2654081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 6207177 - 6207303
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc-cctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| |  ||||||||||  ||||||||||||||||| | ||||||        |||||||||  |||  |||||||||||| |||||    
T  6207177 gcttaatagcagttttcgctccctaactttagcgaagttgtgattttggactcctaagaaaaaaaactacaaaactgccccataagttttacaactgtag 6207276  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    |||||||||| ||||||||||||||||    
T  6207277 cagttttggctccccaagaccaatttt 6207303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 2837147 - 2837087
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||||| |||  |||||||||||||||||||||||||||||| ||||| ||||||||    
T  2837147 ctacaaaaccgccccctaagttttacaattgtagcagttttggccctccaaggccaatttt 2837087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 14449276 - 14449400
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagca 125  Q
    |||||||||||||| | ||||||||||| ||||||||| |||||||| ||||||||        |||||||||   |||||||||||| ||| | || ||    
T  14449276 ttaatagcagttttcgccccctaactttcacgaagttgagattttggccccctaagaaaaacaactacaaaactgtcctttaagttttgcaactatacca 14449375  T
Q  126 gttttggccccccaagaccaatttt 150  Q
    |||||||||||||||  ||||||||    
T  14449376 gttttggccccccaatgccaatttt 14449400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 35383766 - 35383818
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||||||||||    
T  35383766 gcttaatagcagttttcgccccctaactttcacgaagttgtgattttggcccc 35383818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 35393982 - 35393856
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggccc-ctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    ||||||||||||||||   ||||||||||| ||||||||| |||||||| || |||||        |||||||||| |||  || |||||  || |||||    
T  35393982 gcttaatagcagttttcaccccctaactttcacgaagttgcgattttggacctctaagaaaaaaaactacaaaaccgccccctaggttttgtaactgtag 35393883  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    |||||||||||||||||| ||||||||    
T  35393882 cagttttggccccccaaggccaatttt 35393856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 51362851 - 51362806
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttg 72  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||    
T  51362851 ttaatagcagttttcgtcccctaacttttacaaagttgtgattttg 51362806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 54983847 - 54983904
Alignment:
Q  23 aagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaa 80  Q
    |||||||||||||||||| |||||||||||||||||||| || ||||| | |||||||    
T  54983847 aagcttaatagcagttttcgtcccctaacttttacgaagatgcgatttggccccctaa 54983904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 21957784 - 21957724
Alignment:
Q  21 taaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    |||||||||||||||||||| | |||||||||||| | |||||| |||||||||| |||||    
T  21957784 taaagcttaatagcagttttagccccctaacttttccaaagttgcgattttggcctctaag 21957724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 50769674 - 50769622
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||| ||||||||| | ||||||||||||||||||||| ||||||||||||    
T  50769674 gcttaaaagcagttttcgccccctaacttttacgaagttgcgattttggcccc 50769622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 21597598 - 21597661
Alignment:
Q  147 ttttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttctt 210  Q
    |||||| ||||||||| |||||| ||||||||||||||||||  ||||||| |||||| |||||    
T  21597598 ttttgggggccaaaactgccacatatgcaaaatttaggggacggttttgtagtttttttttctt 21597661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 2181437 - 2181325
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    ||||||||||| ||||||  |||||||||||| ||||||| ||||||||| ||| |         |||||||||  |||| |||||||| ||| |||| |    
T  2181437 gcttaatagcactttttgctccctaacttttatgaagttgcgattttggctccttaagaaaagaactacaaaactgccctctaagttttgcaactgtaac 2181338  T
Q  125 agttttggccccc 137  Q
    |||||||||||||    
T  2181337 agttttggccccc 2181325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 25909488 - 25909540
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||||||||||||   |||||||||||| | |||||||||||||||||||    
T  25909488 gcttaatagcagttttaaccccctaacttttccaaagttgtgattttggcccc 25909540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 35615311 - 35615367
Alignment:
Q  21 taaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||||||| | ||||||||||||   |||||| ||||||||||||    
T  35615311 taaagcttaatagcagttttagccccctaacttttctaaagttgcgattttggcccc 35615367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 43074617 - 43074669
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||||||| |||| | ||||||||||| ||||||||| ||||||||||||    
T  43074617 gcttaatagcaattttcgccccctaactttcacgaagttgcgattttggcccc 43074669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 2180875 - 2180836
Alignment:
Q  165 ccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  2180875 ccacagatgcaaaatttaggggacgattttgtagtttttt 2180836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 3658235 - 3658112
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagcag 126  Q
    |||||||||||||| |||| |||||||||| ||||||| |||||||  |||| |         ||| |||||   ||| |||||||| ||| ||||||||    
T  3658235 ttaatagcagttttcgtcctctaacttttatgaagttgcgattttgatcccttaagaaaaaaactaaaaaactgtcctctaagttttgcaactgtagcag 3658136  T
Q  127 ttttggccccccaagaccaatttt 150  Q
    ||||||| ||||||| ||||||||    
T  3658135 ttttggctccccaaggccaatttt 3658112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 2016785 - 2016843
Alignment:
Q  18 aaataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggccc 76  Q
    |||||| |||| ||||||||||| | |||||||||||| | |||||| |||||||||||    
T  2016785 aaataaggcttgatagcagttttagccccctaacttttccaaagttgcgattttggccc 2016843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 8965525 - 8965575
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||| |||||| | ||||| |||||||||||||||||||||| |||||    
T  8965525 ttaatagaagttttcgcccccttacttttacgaagttgtgattttagcccc 8965575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 27979012 - 27978958
Alignment:
Q  22 aaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggccc 76  Q
    ||||||||||| || |||| | ||||||||||| ||||||||| |||||||||||    
T  27979012 aaagcttaataacatttttcgccccctaactttaacgaagttgcgattttggccc 27978958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 37831595 - 37831645
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||| | ||||||| ||||| ||||||| ||||||||||||    
T  37831595 ttaatagcagttttagccccctaagttttaagaagttgcgattttggcccc 37831645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 1420537 - 1420586
Alignment:
Q  26 cttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc 75  Q
    ||||||||||||||| | |||||||||||| | |||||| ||||||||||    
T  1420537 cttaatagcagttttagccccctaacttttccaaagttgcgattttggcc 1420586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 11824511 - 11824462
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggc 74  Q
    |||||||| ||||||  | ||||||||||||||||||||| |||||||||    
T  11824511 gcttaataacagtttccgccccctaacttttacgaagttgcgattttggc 11824462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 12719643 - 12719680
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttagggg 186  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  12719643 ttggaggccaaaactgccacagatgcaaaacttagggg 12719680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 21451678 - 21451641
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagac 143  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  21451678 taagttttacaactgtagcagctttggccccccaagac 21451641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 53924748 - 53924801
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccct 78  Q
    ||||||||| |||| | | ||||||||||| ||||||||||||||||| |||||    
T  53924748 gcttaatagtagttctcgccccctaactttcacgaagttgtgattttgacccct 53924801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 6207489 - 6207433
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    |||||||||||||||| | ||||||| |||    |||||||||||||||||||||||    
T  6207489 gcttaatagcagttttagccccctaattttcctaaagttgtgattttggcccctaag 6207433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 10059750 - 10059810
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||||| |||  |||||||| ||| |||||||||||||| ||||||||  |||||||    
T  10059750 ctacaaaaccgccccctaagttttgcaactgtagcagttttggtcccccaaggtcaatttt 10059810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 19909174 - 19909230
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    ||||||||||||||||   |||||||||||  | |||||| ||||||||||||||||    
T  19909174 gcttaatagcagttttaaccccctaactttctcaaagttgcgattttggcccctaag 19909230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 20118218 - 20118166
Alignment:
Q  26 cttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccct 78  Q
    |||||||||| |||| | ||| |||||||||  ||||||||||||||||||||    
T  20118218 cttaatagcaattttagccccttaacttttataaagttgtgattttggcccct 20118166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 21871462 - 21871506
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| ||| ||||||||||||||||| |||| |||||||||    
T  21871462 taagttttgcaactgtagcagttttggccctccaaaaccaatttt 21871506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 21927323 - 21927367
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| ||| ||||||||||||||||| |||| |||||||||    
T  21927323 taagttttgcaactgtagcagttttggccctccaaaaccaatttt 21927367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 29697631 - 29697583
Alignment:
Q  156 ccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    ||||||| ||||||||||||||| ||||||| |  ||||||||||||||    
T  29697631 ccaaaactgccacagatgcaaaacttagggggcggttttgtaatttttt 29697583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 41148613 - 41148565
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg 73  Q
    |||||||||||||||| | ||||||  ||||| ||||||||||||||||    
T  41148613 gcttaatagcagttttggccccctatattttaagaagttgtgattttgg 41148565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 43074671 - 43074715
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| ||| ||||||||||||||||||||||  ||||||||    
T  43074671 taagttttgcaactgtagcagttttggccccccaatgccaatttt 43074715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 50769594 - 50769551
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||||    
T  50769594 taagttttgcaactgtagcagttttggc-ccccaagaccaatttt 50769551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 51362785 - 51362727
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    ||||||||||||| | |||||||| ||| ||||||||||||||  ||||||||||||||||    
T  51362785 ctacaaaaccacc-tctaagttttgcaactgtagcagttttgg-tccccaagaccaatttt 51362727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 53312287 - 53312339
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||||||| |||| | |||||||||||| | |||||| ||||||||||||    
T  53312287 gcttaatagcatttttagccccctaactttttcaaagttgcgattttggcccc 53312339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 34679403 - 34679290
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||         |||||||||| |||  |||||||| ||| |||||    
T  34679403 gcttaatagcagtttttgccccctaactttcacgaagttgtgattttggccccctaa---aaaaaactacaaaaccgccccctaagttttgcaactgtag 34679307  T
Q  124 cagttttggccccccaa 140  Q
    |||||||||||||||||    
T  34679306 cagttttggccccccaa 34679290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 43029104 - 43028981
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc-taagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagca 125  Q
    |||||||||||||||| ||| ||||||| || |||||| |||||||||||| ||||        |||||||||| |||  ||||||||||||||||||||    
T  43029104 ttaatagcagtttttg-cccttaactttcacaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttacaattgtagca 43029006  T
Q  126 gttttggccccccaagaccaatttt 150  Q
    ||||||||||| |||| ||||||||    
T  43029005 gttttggccccacaaggccaatttt 43028981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 6510321 - 6510185
Alignment:
Q  16 ataaataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggc-ccctaagnnnnnnnnctacaaaaccaccctttaagtttta 114  Q
    ||||| |||| |||||||||||||| | || |||||||| | ||||||| ||||||||| |||||||        |||||||||| |||  ||||||||     
T  6510321 ataaaaaaagtttaatagcagttttcgccctctaactttcatgaagttgcgattttggcaccctaagaaaaaag-ctacaaaaccgccccctaagttttg 6510223  T
Q  115 caattgtagcagttttggccccccaagaccaattttgg 152  Q
    ||| ||||||||||||||||||||||||| ||||||||    
T  6510222 caactgtagcagttttggccccccaagactaattttgg 6510185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 19206207 - 19206267
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||| ||||||||    
T  19206207 ctacaaaaccaccccctaagttttacaactgtagcagttttggccccccaaggccaatttt 19206267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 14489523 - 14489412
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    |||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||||        |||||||| |||||  |||||||| ||| ||| ||    
T  14489523 gcttaatagcagttttcgccccctaactttcacgaagttgcgattttggcccctaag-aaaaaaactacaaaatcaccccctaagttttgcaactgtggc 14489425  T
Q  125 agttttggccccc 137  Q
    |||||||||||||    
T  14489424 agttttggccccc 14489412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 37431848 - 37431732
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc-cctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagca 125  Q
    |||||||||||||| | ||||||||||  ||||||||| |||||||||| ||||||        |||||||||| ||| ||||||||| ||| |||||||    
T  37431848 ttaatagcagttttcgccccctaacttccacgaagttgcgattttggcctcctaagaaaaaaa-ctacaaaaccgccccttaagttttgcaactgtagca 37431750  T
Q  126 gttttggccccccaagac 143  Q
     |||||||||||||||||    
T  37431749 tttttggccccccaagac 37431732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 15023151 - 15023026
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    |||||||||||||||| | ||||||||||| | ||||||||||||||| ||||  |         ||||||||||  ||  ||||||||  || ||||||    
T  15023151 gcttaatagcagttttggccccctaactttcaagaagttgtgattttgaccccctaagaaaaaaactacaaaaccgtcccctaagttttgtaactgtagc 15023052  T
Q  125 agttttggccccccaagaccaatttt 150  Q
    | ||||||||||||||||||||||||    
T  15023051 aattttggccccccaagaccaatttt 15023026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 21358423 - 21358366
Alignment:
Q  20 ataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||| |||||||||||||||||| |||||||||||  | |||||||||||||||||||    
T  21358423 ataaggcttaatagcagtttttgccccctaactttctcaaagttgtgattttggcccc 21358366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 18225025 - 18224923
Alignment:
Q  44 cccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagcag-ttttggccccccaaga 142  Q
    |||| |||||||||||||||| ||||||| ||||||||        |||||||| | ||  ||||||||| |||||||||||| ||||||||||||||||    
T  18225025 cccccaacttttacgaagttgcgattttgacccctaagaaaaaa--ctacaaaatcgcctcttaagttttgcaattgtagcaggttttggccccccaaga 18224928  T
Q  143 ccaat 147  Q
    |||||    
T  18224927 ccaat 18224923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 27489548 - 27489493
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    |||||||||||||| ||||||||||||||| |||||||  ||||||||| ||||||    
T  27489548 ttggaggccaaaactgccacagatgcaaaagttagggggtaattttgtagtttttt 27489493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 35718761 - 35718706
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    |||||||||||||| |||||||||||||||| ||||||||  ||||||| ||||||    
T  35718761 ttggaggccaaaactgccacagatgcaaaatgtaggggacggttttgtagtttttt 35718706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 2609081 - 2609135
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    ||||||| |||||| | |||||||||||||||||||| ||||||||||| |||||    
T  2609081 ttaatagtagttttcgccccctaacttttacgaagttttgattttggcctctaag 2609135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 18709248 - 18709298
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc 75  Q
    |||||||||||||||| ||||||||||||| ||||||||  ||||||||||    
T  18709248 gcttaatagcagttttcgtcccctaactttcacgaagtttcgattttggcc 18709298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 34761171 - 34761061
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggc-ccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagca 125  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||  | || ||||        |||||||||| ||   |||||||| |||||||||||    
T  34761171 ttaatagcagttttcgtcccctaactttcacgaagttgcgattttaactccttaagaaaaagaactacaaaaccgccacctaagttttgcaattgtagca 34761072  T
Q  126 gttttggcccc 136  Q
    |||||||||||    
T  34761071 gttttggcccc 34761061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 4925755 - 4925706
Alignment:
Q  26 cttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc 75  Q
    |||||||| | |||||||||||||||||| ||||||||| ||||||||||    
T  4925755 cttaatagtaatttttgtcccctaactttcacgaagttgcgattttggcc 4925706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 19399488 - 19399435
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccct 78  Q
    |||||||||||||||| | |||||||||||| | ||||||||||||||| ||||    
T  19399488 gcttaatagcagttttagccccctaactttttcaaagttgtgattttggtccct 19399435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 19895614 - 19895671
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaag 81  Q
    |||||||| ||||||| ||||||||||||||||||| ||| |||||||| ||||||||    
T  19895614 gcttaatatcagttttcgtcccctaacttttacgaaattgcgattttggtcccctaag 19895671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 4576546 - 4576669
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc-taagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagca 125  Q
    |||||||||||||| | | |||||||||| | ||||||| ||||||||||| ||||        |||||||| |  ||  |||||||| ||| |||||||    
T  4576546 ttaatagcagttttagcctcctaactttttcaaagttgtcattttggccccctaagaaaaaaaactacaaaatcgtcccataagttttgcaactgtagca 4576645  T
Q  126 gttttggccccccaagaccaatttt 150  Q
    ||||||| |||||||||||||||||    
T  4576646 gttttgg-cccccaagaccaatttt 4576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 39918689 - 39918629
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||||| |||  |||||||| ||| ||||||| ||||||||||||||| ||||||||    
T  39918689 ctacaaaaccgccccctaagttttgcaactgtagcaattttggccccccaaggccaatttt 39918629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 5362372 - 5362438
Alignment:
Q  147 ttttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttctta 214  Q
    |||||||||||||||| ||||||| || |||| ||| ||||||||||||||  ||||| |||||||||    
T  5362372 ttttggaggccaaaactgccacagttgtaaaacttaagggacaattttgtagcttttt-ttcttctta 5362438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 4925547 - 4925470
Alignment:
Q  157 caaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagggggttaaaattgctattaagc 237  Q
    |||||| |||||| |||||||| |||||||||  ||||||| |||||| |||||   ||||| |||||| |||||||||||    
T  4925547 caaaactgccacatatgcaaaacttaggggacggttttgtagtttttttttctt---aggggattaaaactgctattaagc 4925470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 31827844 - 31827721
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc-cctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    ||||||||||| |||| | ||||||||||||||||||||| |||| || || ||||||         ||||||| |||||  |||||||| ||| |||||    
T  31827844 gcttaatagcaattttcgccccctaacttttacgaagttgcgattatgacctcctaagaaaaaaa--tacaaaatcaccccctaagttttgcaactgtag 31827747  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    ||||||||| |||||||| ||||||||    
T  31827746 cagttttgg-cccccaaggccaatttt 31827721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 34679098 - 34679148
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc 75  Q
    |||||||||||||||| | |||||||||||| | |||||| ||||||||||    
T  34679098 gcttaatagcagttttagccccctaacttttccaaagttgcgattttggcc 34679148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 44617937 - 44617995
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttctt 207  Q
    |||| ||||||||| |||||| |||||||| ||||||| |  |||||||||||||||||    
T  44617937 ttgggggccaaaactgccacaaatgcaaaacttagggggcggttttgtaattttttctt 44617995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 5470584 - 5470524
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaattttg 151  Q
    |||||||||| ||| ||||||||||||  ||| ||||||||||| ||||||| |||||||||    
T  5470584 ctacaaaaccgccccttaagttttacatctgtggcagttttggc-ccccaaggccaattttg 5470524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 15022839 - 15022888
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggc 74  Q
    |||||||||||||||| | ||||||||||||   ||||||||||||||||    
T  15022839 gcttaatagcagttttagccccctaacttttcgaaagttgtgattttggc 15022888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 5470410 - 5470453
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||    
T  5470410 taagttttgcaattgtagcagttttgg-cccccaaggccaatttt 5470453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 6592725 - 6592777
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||| | |||||||||||| | |||||| ||||||| ||||    
T  6592725 gcttaatagcagttttagccccctaacttttccaaagttgcgattttgacccc 6592777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 14943856 - 14943808
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg 73  Q
    |||||||||||||||| | ||| |||||||| | |||||||||||||||    
T  14943856 gcttaatagcagttttagccccttaacttttccaaagttgtgattttgg 14943808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 16043338 - 16043286
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||| ||||||||| | ||||||||||| ||||||||  ||||||||||||    
T  16043338 gcttaacagcagttttcgccccctaactttcacgaagttacgattttggcccc 16043286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 24472757 - 24472701
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    |||||||||||||||| |  |||||| |||| | ||||||||||||| |||||||||    
T  24472757 gcttaatagcagttttagaaccctaatttttccaaagttgtgattttagcccctaag 24472701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 25411648 - 25411573
Alignment:
Q  158 aaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagggggttaaaattgctattaagcc 238  Q
    ||||| ||||||||||||||| ||||||| |  ||||||| |||||     ||||||||||| ||||| ||||||||||||    
T  25411648 aaaactgccacagatgcaaaacttagggggcggttttgtacttttt-----ttcttagggggctaaaactgctattaagcc 25411573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 43028795 - 43028847
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||| | |||||||||| | | |||||| ||||||||||||    
T  43028795 gcttaatagcagttttagccccctaacttctccaaagttgcgattttggcccc 43028847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 44617985 - 44617926
Alignment:
Q  91 tacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaattttg 151  Q
    ||||||||| |||  |||||||| || |||| ||||||||||| |||||||||||||||||    
T  44617985 tacaaaaccgccccctaagttttgcatttgtggcagttttggc-ccccaagaccaattttg 44617926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 727 - 600
Alignment:
Q  21 taaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaag-nnnnnnnnctacaaaaccaccctttaagttttacaat 118  Q
    |||||||| ||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||         |||||||||| ||| ||||||||| ||||    
T  727 taaagcttcatagcagttttcgtctcctaacttttacgaagttgcgattttggccccctaagaaaaaaaaactacaaaaccgccccttaagttttgcaat 628  T
Q  119 tgtagcagttttggccccccaagaccaa 146  Q
    | |||||||||  |||||||||||||||    
T  627 tctagcagtttatgccccccaagaccaa 600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 470 - 530
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaattttg 151  Q
    ||||||||||||||  |||||||||||  ||| |||||||||| ||||||||||||||||||    
T  470 ctacaaaaccaccccctaagttttacatatgtggcagttttgg-cccccaagaccaattttg 530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 23826344 - 23826282
Alignment:
Q  16 ataaataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccct 78  Q
    |||||| | |||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  23826344 ataaattaggcttaatagcagtttttgtcccctaactttcacgaagttgcgattttggcccct 23826282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 4050034 - 4049909
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    |||||||||||||||| | ||| ||||||| ||||||||||||||||||||||  |         |||||||||| |||  |||| ||| ||| ||||||    
T  4050034 gcttaatagcagttttcgccccttaactttcacgaagttgtgattttggccccctaagaaaaaaactacaaaaccgccccctaaggtttgcaactgtagc 4049935  T
Q  125 agttttggccccccaagaccaatttt 150  Q
    ||||||||||||||||| ||||||||    
T  4049934 agttttggccccccaaggccaatttt 4049909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 17876285 - 17876230
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  17876285 ttggaggccaaaaccgccacagatgcaaaatttagggggcagttttgtaatttttt 17876230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 14247295 - 14247407
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc-cctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| | | ||||||||| |||||||||||||||||||| ||||||        |||||||||| |||  |||||||| ||||||| |    
T  14247295 gcttaatagcagttttcgccacctaactttcacgaagttgtgattttggccgcctaag-aaaaaaactacaaaaccgccccataagttttgcaattgtgg 14247393  T
Q  124 cagttttggccccc 137  Q
    ||||||||||||||    
T  14247394 cagttttggccccc 14247407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 3247486 - 3247432
Alignment:
Q  23 aagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||| || |||| ||||||||||||| ||||||||||||||||||||||    
T  3247486 aagcttaataacaattttcgtcccctaactttcacgaagttgtgattttggcccc 3247432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 3382133 - 3382080
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccct 78  Q
    |||||| | ||||||||| |||||||||||||||||||||||||||||| ||||    
T  3382133 gcttaacatcagtttttgccccctaacttttacgaagttgtgattttggtccct 3382080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 36580275 - 36580332
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaag 81  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||    
T  36580275 gcttaatagcagttttcggcccctaactttcacgaagttgtgattttggtcccctaag 36580332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 6726572 - 6726520
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||    
T  6726572 gcttaatagctgtttttgtcccctaactttcacgaagttgcgatttaggcccc 6726520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 11373848 - 11373904
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    |||||||||||||||| | ||||||||||||||||||||| ||| ||| ||||||||    
T  11373848 gcttaatagcagttttcgccccctaacttttacgaagttgcgatcttgacccctaag 11373904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 35250351 - 35250307
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||    
T  35250351 taagttttgcaactgtagcagttttggccccccaagaccaatttt 35250307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 15029356 - 15029312
Alignment:
Q  26 cttaatagcagtttttgtcccctaacttttacgaagttgtgattttg 72  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||    
T  15029356 cttaatagcagttt--gtcccctaacttttacgaagttgtgattttg 15029312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 17876470 - 17876347
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    ||||||||||||||||   ||||||||||| ||||||||  ||||||||||||| |          |||||||||  || ||||||||| ||| ||||||    
T  17876470 gcttaatagcagttttcaccccctaactttcacgaagttacgattttggccccttaagaaaaaaattacaaaaccgtccattaagttttgcaactgtagc 17876371  T
Q  125 agttttggccccccaagaccaatt 148  Q
    ||||||||||||| || |||||||    
T  17876370 agttttggcccccaaaaaccaatt 17876347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 23746205 - 23746154
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccct 78  Q
    |||||||||| ||| ||||||||||||||||||||||| |||||| ||||||    
T  23746205 ttaatagcagctttcgtcccctaacttttacgaagttgcgattttagcccct 23746154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 28350117 - 28350243
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| | ||||||||||| ||||||||  |||||||| ||||||||        |||||||||| |||  |||||||| |   ||| |    
T  28350117 gcttaatagcagttttagccccctaactttcacgaagttacgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcccctgtgg 28350216  T
Q  124 cagttttggccccccaagaccaattttg 151  Q
    ||||||||| ||||||||||||||||||    
T  28350217 cagttttgg-cccccaagaccaattttg 28350243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 44312746 - 44312801
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaa 80  Q
    |||||||| ||||||| ||| ||||||||||||||||||| ||||||| |||||||    
T  44312746 gcttaataacagttttcgtctcctaacttttacgaagttgcgattttgacccctaa 44312801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 21505927 - 21505878
Alignment:
Q  28 taatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||||||||| |||||||||||||| | |||||| ||||||||||||    
T  21505927 taatagcagttttagtcccctaactttttcaaagttgcgattttggcccc 21505878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 48059259 - 48059210
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggc 74  Q
    |||||||||||||||| | ||||||| ||||| |||||||||||||||||    
T  48059259 gcttaatagcagttttaggcccctaagttttaagaagttgtgattttggc 48059210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 5172771 - 5172711
Alignment:
Q  90 ctacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||||| |||  |||||||| ||| |||||||||||||| |||||||| ||||||||    
T  5172771 ctacaaaaccgccccctaagttttgcaactgtagcagttttggtcccccaaggccaatttt 5172711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 45697488 - 45697540
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||| ||||||| |||||||||||||  |||||||| ||||||||||||    
T  45697488 gcttaataacagttttcgtcccctaactttctcgaagttgcgattttggcccc 45697540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 18504552 - 18504428
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||| ||||||| ||||||||||||| | ||||||| |||||||  |||||||         ||| ||||||  || ||||||||| |||||||||    
T  18504552 gcttaataacagttttcgtcccctaactttcatgaagttgcgattttgatcccctaa--aaaaaaactaaaaaaccgtcccttaagttttgcaattgtag 18504455  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    ||||||||||| |||||  ||||||||    
T  18504454 cagttttggcctcccaatgccaatttt 18504428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 19645112 - 19645058
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    ||||||||| |||| | ||| ||||||| ||||||||| ||||||||||||||||    
T  19645112 ttaatagcaattttcgccccttaactttcacgaagttgcgattttggcccctaag 19645058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 45697599 - 45697537
Alignment:
Q  158 aaaacggccacagatgcaaaatttaggggacaattttgta-attttttcttcttcttaggggg 219  Q
    ||||| || |||| ||||||||||| ||| ||||||||||  |||||||||||||||||||||    
T  45697599 aaaactgctacagttgcaaaatttatggggcaattttgtagtttttttcttcttcttaggggg 45697537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 10097637 - 10097674
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagac 143  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  10097637 taagttttgcaattgtagcagttttggccccccgagac 10097674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 19644884 - 19644928
Alignment:
Q  105 ttaagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    ||||||||||||| |||||||||||||| || ||||||||||||||    
T  19644884 ttaagttttacaactgtagcagttttgg-cctccaagaccaatttt 19644928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 21748127 - 21748082
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattt 70  Q
    |||||||||||||||| | ||||||||||| ||||||||| |||||    
T  21748127 gcttaatagcagttttcgccccctaactttcacgaagttgcgattt 21748082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 19645000 - 19645056
Alignment:
Q  148 tttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    ||||||||||||||| || |||| ||||||| |||| || |||||| ||||||||||    
T  19645000 tttggaggccaaaactgctacagttgcaaaacttagagggcaatttggtaatttttt 19645056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 20185148 - 20185104
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| ||| ||||||||||||||||||||||| | ||||||    
T  20185148 taagttttgcaactgtagcagttttggccccccaaggctaatttt 20185104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 20505322 - 20505270
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||||||||||||   |||||| |||||| ||||||| ||||||||||||    
T  20505322 gcttaatagcagttttcaccccctagcttttatgaagttgcgattttggcccc 20505270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 21939387 - 21939335
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||| | ||||||| | | ||||||||| ||||||||||||    
T  21939387 gcttaatagcagttttggccccctaagtatcacgaagttgcgattttggcccc 21939335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 28786070 - 28786014
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    ||||||||||||||||   ||| |||||||| | |||||||||||||||||| ||||    
T  28786070 gcttaatagcagttttaaccccataacttttccaaagttgtgattttggcccttaag 28786014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 28960644 - 28960703
Alignment:
Q  20 ataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaa 80  Q
    ||||||||||||||||| ||||| ||||||| | | | |||||||||||||||| ||||||    
T  28960644 ataaagcttaatagcag-ttttggcccctaagtatcaagaagttgtgattttggtccctaa 28960703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 35793376 - 35793432
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgatttt-ggcccctaa 80  Q
    |||||||||||||||| | ||||||| ||||| ||||||| |||||| |||||||||    
T  35793376 gcttaatagcagttttggccccctaaattttaggaagttgcgattttaggcccctaa 35793432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 10727191 - 10727317
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcc-cctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    |||||||||||||||| | | |||||||||  ||||||||||||||||| | ||||||        |||||||||  |||| |||||||| ||| |||||    
T  10727191 gcttaatagcagttttcgcctcctaactttagcgaagttgtgattttggactcctaagaaaaaaaactacaaaactgccctctaagttttgcaactgtag 10727290  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    |||||||||||||||||| ||||||||    
T  10727291 cagttttggccccccaaggccaatttt 10727317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 12766527 - 12766403
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagc 124  Q
    ||||||||||||||||   ||||||||||| ||||||||| ||||||||||||  |         |||||||||| ||| ||||||||| ||| ||||||    
T  12766527 gcttaatagcagttttcaccccctaactttcacgaagttgcgattttggccccctaaaaaaaaaactacaaaaccgccccttaagttttgcaactgtagc 12766428  T
Q  125 agttttggccccccaagaccaatttt 150  Q
    ||||||||| ||||||| ||||||||    
T  12766427 agttttggc-ccccaaggccaatttt 12766403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 30349669 - 30349617
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    ||||||||||||||||||||||||||||||| | |||||| ||||||||||||    
T  30349669 gcttaatagcagtttttgtcccctaactttttcaaagttgcgattttggcccc 30349617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 28011436 - 28011322
Alignment:
Q  26 cttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagca 125  Q
    |||||||||||||||   ||||||||||| ||||||||| ||||||| ||| ||||        |||||||||| ||| ||||||||| ||| |||||||    
T  28011436 cttaatagcagttttcaccccctaactttcacgaagttgcgattttgtccc-taagagaaaaaactacaaaaccgccccttaagttttgcaactgtagca 28011338  T
Q  126 gttttggccccccaag 141  Q
    ||||||||||| ||||    
T  28011337 gttttggccccacaag 28011322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 1377517 - 1377463
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    |||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  1377517 ttaatatcagttttcgtcccctaactttcacgaagttgcgattttggcccctaag 1377463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 1385265 - 1385211
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    |||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  1385265 ttaatatcagttttcgtcccctaactttcacgaagttgcgattttggcccctaag 1385211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 33401366 - 33401242
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggc-ccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtag 123  Q
    ||||||||||||||||   ||||||||||||||||||||  ||||||||| ||||||         |||||||||   ||  |||||||| ||| |||||    
T  33401366 gcttaatagcagttttcaccccctaacttttacgaagttacgattttggctccctaa--aaaaaaactacaaaactgtcccctaagttttgcaactgtag 33401269  T
Q  124 cagttttggccccccaagaccaatttt 150  Q
    |||||||||||||||||||||||||||    
T  33401268 cagttttggccccccaagaccaatttt 33401242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 3579596 - 3579648
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||    
T  3579596 gcttaatagcagttttcgtcccttaactttcacgaagttgcgattttggcccc 3579648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 151
Target Start/End: Complemental strand, 10727504 - 10727381
Alignment:
Q  28 taatagcagtttttgtcccctaacttttacgaagttgtgattttgg-cccctaagnnnnnnnnctacaaaaccaccctttaagttttacaattgtagcag 126  Q
    ||||||||||||| | |||||||||||| | ||||||||||||||| ||||||||        |||||||||| |||  |||||||| ||  ||| ||||    
T  10727504 taatagcagttttagccccctaacttttccaaagttgtgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatctgtggcag 10727405  T
Q  127 ttttggccccccaagaccaattttg 151  Q
    |||||| |||||||| |||||||||    
T  10727404 ttttgg-cccccaaggccaattttg 10727381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 1377318 - 1377270
Alignment:
Q  154 ggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttt 202  Q
    ||||||||| |||||| |||||||||||||||| | |||||||||||||    
T  1377318 ggccaaaacagccacaaatgcaaaatttagggggcgattttgtaatttt 1377270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 1385066 - 1385018
Alignment:
Q  154 ggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttt 202  Q
    ||||||||| |||||| |||||||||||||||| | |||||||||||||    
T  1385066 ggccaaaacagccacaaatgcaaaatttagggggcgattttgtaatttt 1385018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 2840872 - 2840906
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaa 140  Q
    |||||||| ||||||||||||||||||||||||||    
T  2840872 taagttttgcaattgtagcagttttggccccccaa 2840906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 17248872 - 17248830
Alignment:
Q  107 aagttttacaattgtagcagttttggccccccaagaccaattt 149  Q
    ||||||| ||||||||||||||||||||||||||  |||||||    
T  17248872 aagttttgcaattgtagcagttttggccccccaaagccaattt 17248830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 17248962 - 17248903
Alignment:
Q  18 aaataaag-cttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||| ||||||||||||| | | ||||||||||||| ||||||| ||||||||||||    
T  17248962 aaataaagacttaatagcagttgtcg-cccctaacttttaggaagttgcgattttggcccc 17248903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 32143326 - 32143385
Alignment:
Q  91 tacaaaaccaccctttaagttttacaattgtagcagttttggccccccaagaccaattttg 151  Q
    ||||||||| ||| ||||||||| ||  ||| |||||||||| ||||||||||||||||||    
T  32143326 tacaaaaccgccccttaagttttgcacctgtggcagttttgg-cccccaagaccaattttg 32143385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 19652 - 19602
Alignment:
Q  27 ttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||| |||||||||||||| | |||||| ||||||||||||    
T  19652 ttaatagcagttttagtcccctaactttttcaaagttgcgattttggcccc 19602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 6060 - 6113
Alignment:
Q  24 agcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||| |||||||| || |||||||| ||||||||||||||||| ||||    
T  6060 agcttaatagtagtttttgccctctaactttcacgaagttgtgattttgacccc 6113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 21970 - 21917
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccct 78  Q
    |||||||||||||||| ||||||||||||||| |  |||| |||||||||||||    
T  21970 gcttaatagcagttttcgtcccctaacttttatgctgttgcgattttggcccct 21917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 19906 - 19971
Alignment:
Q  16 ataaataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccctaag 81  Q
    ||||| |||||||||||||||||||   ||||||| ||||   |||||||||||||||||||||||    
T  19906 ataaaaaaagcttaatagcagttttaaccccctaaattttttaaagttgtgattttggcccctaag 19971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 20030 - 19974
Alignment:
Q  148 tttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaatttttt 204  Q
    ||||| ||||||||| ||||||||||||||| |||| |||| |||||||| ||||||    
T  20030 tttgggggccaaaactgccacagatgcaaaacttagtggacgattttgtagtttttt 19974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 1472 - 1524
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||| | ||||||||||| || |||||| ||||||||||||    
T  1472 gcttaatagcagttttagccccctaactttcacaaagttgagattttggcccc 1524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 2839 - 2879
Alignment:
Q  110 ttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||| ||||||||||||||| ||||||||||||||||    
T  2839 ttttacaactgtagcagttttggctccccaagaccaatttt 2879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 405060 - 405116
Alignment:
Q  16 ataaataaagcttaatagcagtttttgtcccctaacttttacgaagttgtgattttg 72  Q
    ||||| || |||||||||||||||| ||||||||| ||||| |||||| ||||||||    
T  405060 ataaaaaaggcttaatagcagttttagtcccctaagttttaagaagttatgattttg 405116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 46273 - 46339
Alignment:
Q  149 ttggaggccaaaacggccacagatgcaaaatttaggggacaattttgtaattttttcttcttcttagg 216  Q
    |||| ||||||||| | ||||||||||||| |||| || || |||||||||||||| |||||||||||    
T  46273 ttgggggccaaaactgtcacagatgcaaaacttagagggcagttttgtaatttttt-ttcttcttagg 46339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 24900 - 24942
Alignment:
Q  31 tagcagtttttgtcccctaacttttacgaagttgtgattttgg 73  Q
    |||||||||| ||||||||||||||||||||||  ||||||||    
T  24900 tagcagttttcgtcccctaacttttacgaagttacgattttgg 24942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0372 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 343 - 306
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagac 143  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  343 taagttttacaactgtagcagctttggccccccaagac 306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 3640 - 3692
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||| | |||||||||||  | |||||| ||||||||||||    
T  3640 gcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 3640 - 3692
Alignment:
Q  25 gcttaatagcagtttttgtcccctaacttttacgaagttgtgattttggcccc 77  Q
    |||||||||||||||| | |||||||||||  | |||||| ||||||||||||    
T  3640 gcttaatagcagttttagccccctaactttcccaaagttgcgattttggcccc 3692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 77092 - 77048
Alignment:
Q  106 taagttttacaattgtagcagttttggccccccaagaccaatttt 150  Q
    |||||||||||| ||||||||||||||||| ||| | ||||||||    
T  77092 taagttttacaactgtagcagttttggccctccacggccaatttt 77048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University