View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16515_low_21 (Length: 459)
Name: NF16515_low_21
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Complemental strand, 24279554 - 24279123
Alignment:
| Q |
13 |
tagggctgagagcttatgttatatgccaagtgcttgagatcattgcaaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaagtcagaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24279554 |
tagggctgagagcttatgttatatgccaagtgcttgagatcattgcaaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaagtaagaag |
24279455 |
T |
|
| Q |
113 |
gttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagttattataacttcatgannnnnn |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24279454 |
gttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagttattataacttcatgatttttc |
24279355 |
T |
|
| Q |
213 |
nnnnnnnggtactaagtcatttatacttgctctgaattgactttgataagtgacctgatctttgtgtgttcattttgttgttcattgtctctgtgcaact |
312 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24279354 |
tttttttggtactaagtcatttatacttgttctgaattgactttgataagtgacctgatctttatgtgttcattttgttgttcattgtctctgtgcaact |
24279255 |
T |
|
| Q |
313 |
gtttatattgtgactcagatatcttgatttatgcttttaggtgtattacagtgacgaaacatgtacaatatctgtacaatccatagaaggtaaatgtgaa |
412 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24279254 |
gtttatattg--actcagatatcttgatttgtgcttttaggtgtattacagtgacgaagcatgtacaatatctgtacaatccatagaaggtaaatgtgaa |
24279157 |
T |
|
| Q |
413 |
gtcaggaaaaagattgacgtccctgaaggatgtg |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
24279156 |
gtcaggaaaaagattgacgtccctgaaggatgtg |
24279123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 31036336 - 31036378
Alignment:
| Q |
354 |
tgtattacagtgacgaaacatgtacaatatctgtacaatccat |
396 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
31036336 |
tgtattacagtgatgaaacatgtacaatatctatacaatccat |
31036378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 31036229 - 31036277
Alignment:
| Q |
238 |
cttgctctgaattgactttgataagtgacctgatctttgtgtgttcatt |
286 |
Q |
| |
|
|||| ||||||||||||||||||| |||| |||| |||||||||||||| |
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|
| T |
31036229 |
cttgatctgaattgactttgataactgacttgatttttgtgtgttcatt |
31036277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 446
Target Start/End: Original strand, 12039600 - 12040031
Alignment:
| Q |
13 |
tagggctgagagcttatgttatatgccaagtgcttgagatcattgcaaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaagtcagaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12039600 |
tagggctgagagcttatgttatatgccaagtgcttgagatcattgccaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaagtcagaag |
12039699 |
T |
|
| Q |
113 |
gttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagttattataacttcatgannnnnn |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
12039700 |
gttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaggttacatacaagttattataactaaatgatttttc |
12039799 |
T |
|
| Q |
213 |
nnnnnnnggtactaagtcatttatacttgctctgaattgactttgataagtgacctgatctttgtgtgttcattttgttgttcattgtctctgtgcaact |
312 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
12039800 |
attttttggtactaagtcattcatacttgttcagaattgactttgataagtgacctgacctttgtgtgttcatattgttgttcattgtctctgtgcaact |
12039899 |
T |
|
| Q |
313 |
gtttatattgtgactcagatatcttgatttatgcttttaggtgtattacagtgacgaaacatgtacaatatctgtacaatccatagaaggtaaatgtgaa |
412 |
Q |
| |
|
||| |||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
12039900 |
gttaatat--tgactcagatatatcgatttatgcttttaggtgtattacagtgatgaaacatgtacaatatctgtacaatccatagaaggtaaatgtcaa |
12039997 |
T |
|
| Q |
413 |
gtcaggaaaaagattgacgtccctgaaggatgtg |
446 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
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|
| T |
12039998 |
gtcaggaaaaagattgacgtccctgatggatgtg |
12040031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 446
Target Start/End: Complemental strand, 20162809 - 20162378
Alignment:
| Q |
13 |
tagggctgagagcttatgttatatgccaagtgcttgagatcattgcaaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaagtcagaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20162809 |
tagggctgagagcttatgttatatgccaagtgcttgagatcattgccaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaagtcagaag |
20162710 |
T |
|
| Q |
113 |
gttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagttattataacttcatgannnnnn |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
20162709 |
gttcttccgaccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacatacaagttattataactaaatgatttttc |
20162610 |
T |
|
| Q |
213 |
nnnnnnnggtactaagtcatttatacttgctctgaattgactttgataagtgacctgatctttgtgtgttcattttgttgttcattgtctctgtgcaact |
312 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||| ||||||| |
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|
| T |
20162609 |
attttttggtactaagtcattcatacttgttcagaattgactttgataagtgacctgacctttgtgtgttcatattgttgttaattgtctctatgcaact |
20162510 |
T |
|
| Q |
313 |
gtttatattgtgactcagatatcttgatttatgcttttaggtgtattacagtgacgaaacatgtacaatatctgtacaatccatagaaggtaaatgtgaa |
412 |
Q |
| |
|
||| |||| |||||||||||| | ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
20162509 |
gttaatat--tgactcagatatatagatttatacttttaggtgtattacaatgatgaaacatgtacaatatctgtacaatccatagaaggtaaatgtaaa |
20162412 |
T |
|
| Q |
413 |
gtcaggaaaaagattgacgtccctgaaggatgtg |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
20162411 |
gtcaggaaaaagattgacgtccctgaaggatgtg |
20162378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 23 - 442
Target Start/End: Complemental strand, 8052319 - 8051901
Alignment:
| Q |
23 |
agcttatgttatatgccaagtgcttgagatcattgcaaagaaggaaacaaaacaagctgaaataaaatctacagatatcaaagtcagaaggttcttccga |
122 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |
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|
| T |
8052319 |
agcttatgttatatgccaagtgctcgagatcattgccaagaaggaaacaaaacaagctgaaataacatctagagagatcaaagtcagaaggttcttccga |
8052220 |
T |
|
| Q |
123 |
ccggaagatgtatcaagtgagaaggcatactgttctgatgtgcaagaggtaaaaagttacata--caagttattataacttcatgannnnnnnnnnnnng |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||| |||| | |
|
|
| T |
8052219 |
ccggaagatgtatcaagtgagaaggcatattgttctgatgtacacgaggtaaaaagttacatatacaagttattataacttaatgattttttattttt-g |
8052121 |
T |
|
| Q |
221 |
gtactaagtcatttatacttgctctgaattgactttgataagtgacctgatctttgtgtgttcattttgttgttcattgtctctgtgcaactgtttatat |
320 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
8052120 |
gtactaagtcattcatacttgttctgaattgactttgataagtgacctgatctttgtgcgttcatattgttgttcattgtctctgtgcaattgtttatat |
8052021 |
T |
|
| Q |
321 |
tgtgactcagatatcttgatttatgcttttaggtgtattacagtgacgaaacatgtacaatatctgtacaatccatagaaggtaaatgtgaagtcaggaa |
420 |
Q |
| |
|
|| ||||||||||| || |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8052020 |
tg--actcagatatcatgttttatgcttttaggtgtattacagcgatgaaacatgtacaatatctgtacaatccatagaaggtaaatgtgaagtcaggaa |
8051923 |
T |
|
| Q |
421 |
aaagattgacgtccctgaagga |
442 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8051922 |
aaagattgacgtccctgaagga |
8051901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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