View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_22 (Length: 437)
Name: NF16515_low_22
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 37 - 286
Target Start/End: Original strand, 22299578 - 22299828
Alignment:
| Q |
37 |
taagtgaaagtgataattcttgcatgatgattctttttgacaataatacagcttgcaaagatttaatcacatgctcactcaacaactcctagcagtatca |
136 |
Q |
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| T |
22299578 |
taagtgaaagtgataattcttgcatgatgattctttttgacaatattacagcttgcaaagatttaagcacatgctcactcaacaactcctagcagtatca |
22299677 |
T |
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| Q |
137 |
catgcacaagctaaaatattaccaaaatgatataaacaacaa-actcactttcttaaagaaaaaatagtagcaatatatttgacatgtaagaggaattgt |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| || ||||| |||| ||||||||||||||||||||| |
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| T |
22299678 |
catgcacaagctaaaatattaccaaaatgatataaacaacaatactcactttcttcaagaaaaattaatagcattatacttgacatgtaagaggaattgt |
22299777 |
T |
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| Q |
236 |
tgcaagctgttctctaagtaacaaacggtgctttgagtttgaggtaataat |
286 |
Q |
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|||| ||||||||||| ||| |||| | ||||||||||||||||||||||| |
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| T |
22299778 |
tgcatgctgttctctatgtaccaaaggatgctttgagtttgaggtaataat |
22299828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 22293786 - 22293895
Alignment:
| Q |
113 |
actcaacaactcctagcagtatcacatgcacaagctaaaatattaccaaaatgatataaacaacaaactcactttcttaaagaaaaaatagtagcaatat |
212 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || ||||||||| |
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| T |
22293786 |
actcaacagctcccggcagtatcacatgcacaagctaaaatattaccaaaatgatacaaacaacaaactcactttcttaatgaaaaattaatagcaatat |
22293885 |
T |
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| Q |
213 |
atttgacatg |
222 |
Q |
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| T |
22293886 |
atttgacatg |
22293895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 17112840 - 17112881
Alignment:
| Q |
205 |
agcaatatatttgacatgtaagaggaattgttgcaagctgtt |
246 |
Q |
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| T |
17112840 |
agcaatattttagacatgtaagaggaattgttgcaagttgtt |
17112881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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