View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_25 (Length: 428)
Name: NF16515_low_25
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 15557580 - 15557760
Alignment:
| Q |
12 |
attattcttcatacattaaaaaaccaatatcaaaatcaaaaccaacattaatttcctaattactaccatgtctattccacttccaccgaccaaaatcaac |
111 |
Q |
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| T |
15557580 |
attattcttcatacattaaaaaaccaatatcaaaatcaaaaccaacattaatttcctaattactaccatgtctattccacttccaccgacaaaaatcaac |
15557679 |
T |
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| Q |
112 |
attaaccataacaaacttaatcaaaatcaattctttataaacaacccattaattaacaacaaaacccatcataaaaaccct |
192 |
Q |
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| T |
15557680 |
attaaccataacaaacttattcaaaatcaaatctttataaacaatacattaattaacaacaaaacccattataaaaaccct |
15557760 |
T |
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Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 261 - 409
Target Start/End: Original strand, 15557828 - 15557982
Alignment:
| Q |
261 |
aatcgaagaaacatacttaagagccaatttccgataagcagatttaatttcttgatcggtagagttcctggaaacgccaaggacttcatacgggtctcgc |
360 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15557828 |
aatcaaagaaacatacttaagagccaatttccgataagcagatttaatttcttgatcggtagagttcctggaaacgccaaggacttcatacgggtctcgc |
15557927 |
T |
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| Q |
361 |
cggagctgtttctcac------cgtcggcggtgtctttcttctccgacttcgacc |
409 |
Q |
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| T |
15557928 |
cggagctgtttctcgccgtcggcgtcggcggtgtctttcttctccgacttcgacc |
15557982 |
T |
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