View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_26 (Length: 426)
Name: NF16515_low_26
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 28085218 - 28084821
Alignment:
| Q |
16 |
atattatgtgttgaagcttgaataaaaagataattaattgatcagaagaccgaaataatggaagagatcacatatggaaggagtatatgatagtgcatgc |
115 |
Q |
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| T |
28085218 |
atattatgtgctgaagcttgaataaaaagataattaattgatcagaagaccgaaataatggaagagatcacatatggaaggagtatatgatagtgcatgc |
28085119 |
T |
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| Q |
116 |
atcaacaataacaaaacccaataattagcataaactcaaccacaattcctaattaaaagtaatatttcaagcggtatcatatacttacgtatcatacaag |
215 |
Q |
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| T |
28085118 |
atcaacaataacaaaacccaataattagcataaactcaaccataattcctaattaaaagtaatatttcaagaggtatcatatacttacgtatcatacaag |
28085019 |
T |
|
| Q |
216 |
tcaatccttgagggcagaaaaaaccctcgcaacaaggtttacagtttttggttctctttggaatttcctttatgtccttttttagatcaatatccttgcc |
315 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28085018 |
tcaatccttgaggacagaaaaaaccctcgcaacaaggtttacagtttttggttctctttggaatttcctttatgtccttttttagatcaatatccttgcc |
28084919 |
T |
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| Q |
316 |
tgcactacaagcccatccaggttcacaaccagaaacccatgaggtcaaattgcaattcttgttaggttttacataattttcagatgatgctcctccct |
413 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28084918 |
tgcactacaagcccatccaggttcacaaccggaaacccatgaggtcaaattgcaattcttgttaggttttacataattttcagatgatgctcctccct |
28084821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 393
Target Start/End: Complemental strand, 42551782 - 42551707
Alignment:
| Q |
318 |
cactacaagcccatccaggttcacaaccagaaacccatgaggtcaaattgcaattcttgttaggttttacataatt |
393 |
Q |
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| T |
42551782 |
cactacaggcccatccgggctcacaaccagaaacccatgaggttaaattacagttcctgttaggctttaaataatt |
42551707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 401
Target Start/End: Original strand, 41044756 - 41044961
Alignment:
| Q |
196 |
atacttacgtatcatacaagtcaatccttgagggcagaaaaaaccctcgcaacaaggtttacagtttttggttctctttggaatttcctttatgtccttt |
295 |
Q |
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|||||||| |||||| ||||| ||||||||||| |||||||| || || |||||||||| ||| | | |||| ||||| || ||||| || ||| |
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| T |
41044756 |
atacttacttatcatgcaagttaatccttgaggacagaaaaacccttcacaacaaggttgacaatcatcaattcttgaaggaatatcttttatatcattt |
41044855 |
T |
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| Q |
296 |
tttagatcaatatccttgcctgcactacaagcccatccaggttcacaaccagaaacccatgaggtcaaattgcaattcttgttaggttttacataatttt |
395 |
Q |
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| T |
41044856 |
ttgagatcaattctctcagcagcactacaactccaaccaggttcacaaccagaaccccatgaagtcaagttgcaatttatgttaggttttacataacttg |
41044955 |
T |
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| Q |
396 |
cagatg |
401 |
Q |
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|||||| |
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|
| T |
41044956 |
cagatg |
41044961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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