View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_28 (Length: 411)
Name: NF16515_low_28
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 33860691 - 33860307
Alignment:
| Q |
11 |
ttatacttctgccaaagtccctgcaaactctcccttcccatgggttcttgaaatgaaccctccttggcataccaatcattagaggagtaaccgagtggac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33860691 |
ttatacttctgccaaagtccctgcaaactctcccttcccatgggttcttgaaatgaaccctccttggcataccaatcattagaggagtaaccgagtggac |
33860592 |
T |
|
| Q |
111 |
gatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttctctccaatcatg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33860591 |
gatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctcgatgaatttgtattgttccgatccttctctccaatcatg |
33860492 |
T |
|
| Q |
211 |
ctcactgtcagctatacagaaacgaaacatgccataatctgttgcatacctgcatatttccaattttcatcattcatttggaccaagtgataataaattc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33860491 |
ctcactgtcagctatacagaaacgaaacatgccataatctgttgcatacctgcatatttccaattttcatcattcatttggaccaagtgataataaattc |
33860392 |
T |
|
| Q |
311 |
aattgagagatgaaaatcttatatactaaagactaaagctaaacatgttatagtatgtatttttgtttataaccatgttataggt |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33860391 |
aattgagagatgaaaatcttatatactaaagactaaagctaaacatgttatagtatgtatttttgtttataaccatgttataggt |
33860307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 33875569 - 33875288
Alignment:
| Q |
11 |
ttatacttctgccaaagtccctgcaaactctcccttcccatgggttcttgaaatgaaccctccttggcataccaatcattagaggagtaaccgagtggac |
110 |
Q |
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|
||||||||||||||||| | ||||||||| |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| | ||||| | |
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| T |
33875569 |
ttatacttctgccaaagcctctgcaaactttcccttcccatgggctcttcaaatgaaccctcctcggcataccaatcattagaggagtaagcaagtgggc |
33875470 |
T |
|
| Q |
111 |
gatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttctctccaatcatg |
210 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||||| |
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| T |
33875469 |
gatgtgctgcaaatattaaccatggttgttgttttctatctacagttgcaaggtaatgctcgatgaatttgtactgttccgatccttctctccagtcatg |
33875370 |
T |
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| Q |
211 |
ctcactgtcagctatacagaaacgaaacatgccataatctgttgcatacctgcatatttccaattttcatcattcatttgga |
292 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33875369 |
ctcactgtctgctatacagaaatgaaacatgccataatctgttgcatacctgcatatttccaattttcatcattcatttgga |
33875288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 33870978 - 33870701
Alignment:
| Q |
11 |
ttatacttctgccaaagtccctgcaaactctcccttcccatgggttcttgaaatgaaccctccttggcataccaatcattagaggagtaaccgagtggac |
110 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||||||||| |||| |||||||||||| ||||| || |||||||||||||||||||| ||||| | |
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| T |
33870978 |
ttatacttttgccaaagcccctgcaaactttcccttcccatgggatcttcaaatgaaccctctttggcgtatcaatcattagaggagtaaccaagtgggc |
33870879 |
T |
|
| Q |
111 |
gatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttctctccaatcatg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
33870878 |
gatgtgctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctcgatgaatttgtattgttccgatccttctctccagtcatg |
33870779 |
T |
|
| Q |
211 |
ctcactgtcagctatacagaaacgaaacatgccataatctgttgcatacctgcatatttccaattttcatcattcatt |
288 |
Q |
| |
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||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |
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| T |
33870778 |
ttcagtgtctgctatacagaaacgaaacatgccataatctgtggcatacctgcatatttccaattttcgtcgttcatt |
33870701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 42784501 - 42784256
Alignment:
| Q |
17 |
ttctgccaaagtccctgcaaactctcccttcccatgggttcttgaaatgaaccctccttggcataccaatcattagaggagtaaccgagtggacgatgtg |
116 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||| || ||| |||||| || ||| | |||||||| | |||||| || || || |||||| | |
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| T |
42784501 |
ttctgccaaagtctctgcaaactttcccttcccattggctctgcaaatgacccttccattccataccaaaagtcagaggaatatccaagcacacgatgcg |
42784402 |
T |
|
| Q |
117 |
ctgcaaagattaaccatggttgttgttttctatctactgttgcaaggcaatgctctatgaatttgtattgttccgatccttctctccaatcatgctcact |
216 |
Q |
| |
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| |||||||| ||||| ||||||| || ||| || ||||||||||| |||||||| ||||||||||| ||||| |||||||||| ||||||||| ||| | |
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| T |
42784401 |
cagcaaagatcaaccagggttgtttttgtctgtccactgttgcaagacaatgctcgatgaatttgtactgttcagatccttctcgccaatcatgttcagt |
42784302 |
T |
|
| Q |
217 |
gtcagctatacagaaacgaaacatgccataatctgttgcatacctg |
262 |
Q |
| |
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||||||||| ||||| ||||||||||||||||| |||||||||||| |
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|
| T |
42784301 |
gtcagctatgcagaagcgaaacatgccataatccgttgcatacctg |
42784256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 20003611 - 20003693
Alignment:
| Q |
164 |
caatgctctatgaatttgtattgttccgatccttctctccaatcatgctcactgtcagctatacagaaacgaaacatgccata |
246 |
Q |
| |
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|||||||| ||||| ||||||||||| | |||||||||||||||||| ||| |||| || | ||||||||| ||||||||||| |
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| T |
20003611 |
caatgctcaatgaacttgtattgttctgttccttctctccaatcatgttcagtgtctgcgacacagaaacggaacatgccata |
20003693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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