View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_3 (Length: 683)
Name: NF16515_low_3
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 19 - 618
Target Start/End: Original strand, 33415294 - 33415888
Alignment:
| Q |
19 |
tccttaactctgagactcttgtgttggtggaattcttcgctccattgtgtggcccctgcaagaatgttgatttcaaaatggttgagctggcaaatgaata |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33415294 |
tccttaactctgagactcttgtgttggtggaattcttcgctccattgtgtagcccctgcaagaatgttgatttcaaaatggttgagctggcaaatgaata |
33415393 |
T |
|
| Q |
119 |
tgcaggtgaggtcgagtttttcaaactcaatgttgatgaaaatcaacttattccttctaaatataggattaaaggtattccaaatgtccttatcttcaaa |
218 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33415394 |
tgcaggtgaggtcgagtttttcaaattcaatgttgatgacaatcaacttattccttctaaatatgggattaaaggtattccaaatgtccttatcttcaaa |
33415493 |
T |
|
| Q |
219 |
aatggtgaacaaagagatacactttttggtaacttacccaaggcaacgtttatcagacgtatggaacaaaacctatgagatgggcaannnnnnnnnnnng |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
33415494 |
aatggtgaacaaagagatacactttttggtaacttacccaaggcaacgtttatcagacgtatggaacaaaacctatgagatgggcta-tatttttttttg |
33415592 |
T |
|
| Q |
319 |
ttgcatgttttgctttcttgaataatcatcaatcatttgtggttttcaatgaaaaaattataatcatttatgggatgattcccatattgtggtttttaga |
418 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33415593 |
ttgcatgttttgctttcttgaata---atcaatcatttgtggttttcaatgaaaaaattataatcatttatgggatgattcccatattgtggtttttaga |
33415689 |
T |
|
| Q |
419 |
taattatagtcacctactaagcatgagtacttgaaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctctgt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33415690 |
taattatagtcacctactaagcatgagtacttgaaaaaatgaagtatttgtatcaaat--acgaatttgagacatattgaggtttttctttattctctgt |
33415787 |
T |
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| Q |
519 |
tgtaagtgaaatttgtgac-ttatgatacataaacacaataatataatggtatttgtgtatttgagttttgctgttgtaagcaaaccacattttcttaaa |
617 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
33415788 |
tgtaagtgaaatttgtgactttatgatagataaacacaataatataatggtatttgtgtatttgagttttgctgttgtaagaaagccacattttcttaaa |
33415887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 33409862 - 33410144
Alignment:
| Q |
19 |
tccttaactctgagactcttgtgttggtggaattcttcgctccattgtgtggcccctgcaagaatgttgatttcaaaatggttgagctggcaaatgaata |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||| |||| ||| |||||||||||||||||||||||| || |
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| T |
33409862 |
tccttaactctgagactcttgtattggtggaattctatgctccatggtgtgcttcctgcaaaggtgttcattccaaaatggttgagctggcaaatgatta |
33409961 |
T |
|
| Q |
119 |
tgcaggtgaggtcgagtttttcaaactcaatgttgatgaaaatcaacttattccttctaaatataggattaaaggtattccaaatgtccttatcttcaaa |
218 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||| |||| |||| ||||| | |||| ||||| ||| | |||||| ||||||| ||||||| |
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| T |
33409962 |
tgcaggtgcggtcaagtttttcaaactcaatgttgatgacaatcgacttgctccttatgcatattggattcaagttcttccaactgtccttttcttcaag |
33410061 |
T |
|
| Q |
219 |
aatggtgaacaaagagatacactttttggtaacttacccaaggcaacgtttatcagacgtatggaacaaaacctatgagatgggca |
304 |
Q |
| |
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||||||||||| ||| ||| || || |||| || ||||| |||||||| ||| || ||| |||||||||||||||||||||| |
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| T |
33410062 |
aatggtgaacacagatatagac---ttcataacgtatccaagacaacgtttctcaaacatattaaacaaaacctatgagatgggca |
33410144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 33397482 - 33397735
Alignment:
| Q |
19 |
tccttaactctgagactcttgtgttggtggaattcttcgctccattgtgtggcccctgcaagaatgttgatttcaaaatggttgagctggcaaatgaata |
118 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||| ||||||| ||||| ||||||| ||| | ||| || ||||||||||||||||||||| || |
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| T |
33397482 |
tccttaaatctaagactcttgtgttggtggaattctatgctccatggtgtgagtcctgcaaaaatactcattccataatggttgagctggcaaatgatta |
33397581 |
T |
|
| Q |
119 |
tgcaggtgaggtcgagtttttcaaactcaatgttgatgaaaatcaacttattccttctaaatataggattaaaggtattccaaatgtccttatcttcaaa |
218 |
Q |
| |
|
|| ||| |||||||||||| |||||| ||| | ||||| |||||| ||||||| | ||||| ||||| |||||||||||| |||| || ||||||| |
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| T |
33397582 |
tgagggtaaggtcgagttttacaaactaaatatggatgacaatcaaaatattcctgttgaatatgggattcaaggtattccaactgtcattttcttcaag |
33397681 |
T |
|
| Q |
219 |
aatggtgaacaaagagatacactttttggtaacttacccaaggcaacgtttatc |
272 |
Q |
| |
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|||||||||||| ||||| | || ||||| | || |||||||||| |||||| |
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| T |
33397682 |
aatggtgaacaagtagatataattgttggtcatgtaaccaaggcaacatttatc |
33397735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 422 - 535
Target Start/End: Original strand, 33410270 - 33410386
Alignment:
| Q |
422 |
ttatagtcacctactaagcatgagtacttg-----aaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctct |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||| || |
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| T |
33410270 |
ttatagtcacctactaagcatgagtacttggaaaaaaaaaacgaagcatttgtatcaaatac--gaatttgagacatattgaggtttttcttcattatcc |
33410367 |
T |
|
| Q |
517 |
gttgtaagtgaaatttgtg |
535 |
Q |
| |
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||||||||||||| |||| |
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| T |
33410368 |
attgtaagtgaaatgtgtg |
33410386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 33399744 - 33399811
Alignment:
| Q |
95 |
aatggttgagctggcaaatgaatatgcaggtgaggtcgagtttttcaaactcaatgttgatgaaaatc |
162 |
Q |
| |
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||||||||||||||||||||| ||||| ||| ||||||| |||| |||||||||| ||||||| |||| |
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| T |
33399744 |
aatggttgagctggcaaatgattatgctggtaaggtcgatttttacaaactcaatattgatgagaatc |
33399811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 402 - 457
Target Start/End: Original strand, 33400006 - 33400061
Alignment:
| Q |
402 |
atattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaa |
457 |
Q |
| |
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||||| ||||||||| ||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
33400006 |
atattatggtttttaaataattacagtgacctactaagcatgagtacttggaaaaa |
33400061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 33397852 - 33397901
Alignment:
| Q |
370 |
aaaaaattataatcatttatgggatgattcccatattgtggtttttagat |
419 |
Q |
| |
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|||||| |||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
33397852 |
aaaaaagtataataatttatggggtgatttgcatattgtggtttttagat |
33397901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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