View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_30 (Length: 407)
Name: NF16515_low_30
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 39059577 - 39059189
Alignment:
| Q |
1 |
acatgttcttcaatagagacagagtgaggaaccacgtctccactatcatcatccattgggataatgtaaaagaatacacacaactatacaccnnnnnnna |
100 |
Q |
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| T |
39059577 |
acatgtccttcaatagagacagagtgaggaaccacgtctccactatcatcatccattgggataatgtaaaagaatacacacaaatatacaccttttttta |
39059478 |
T |
|
| Q |
101 |
actatatataaatgaatatacaccgtgtcacatgattcacaaaacttgcaagattcatctaaaccgtgttgaggctaatcagttagttctacacacaata |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39059477 |
actatatataaatgaatatacactgtgtcacatgattcacaaaacttgcaagattcatctaaaccgtgttgaggctaatcggttagttctacacacaata |
39059378 |
T |
|
| Q |
201 |
ctttcttccacctttcctcaagcttacaaacgtgtaatcgttgatgttgccaagaacaatccaaatgtggaatagcgtcaaaaaatttattaagaatata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39059377 |
ctttcttccacctttcctcaagcttacaaacgtgtaatcgttgatgttgccaagaacaatccaaatgtggaatagcgtcaaaaaatttattaagaatata |
39059278 |
T |
|
| Q |
301 |
aatggtcaaaaaatgccattggtttgagttatagctcctgtactttctgagcaggtagatcatcagagactccttgttaggaggaagat |
389 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39059277 |
aatggtcaaaaaatgccattggtttgagttatggctcctgtactttctaagcaggtagatcatcagagactccttgttaggaggaagat |
39059189 |
T |
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