View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_35 (Length: 382)
Name: NF16515_low_35
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 13615065 - 13614698
Alignment:
| Q |
1 |
attatactggggcaatcaaaaatatataatccagaatagtcaaggatatcttctattattggcaaagcagttatcgatgggagttccggtaaatatttca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13615065 |
attaaactggggcaatcaaaaatatataatccagaatagtcaaggatatcttctattattggcaaagcagttatcgatgggagttccggtaaatatttca |
13614966 |
T |
|
| Q |
101 |
gttgcttacagtgattcaagttcaaatttctaagtttggaaagttcttctatactaggcggtagagtaacaaatctgttcccacccaaccataggaattc |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
13614965 |
gttgcttacagtgattcaagttcaattttctaagtttggaaagttcttctatactaggcggtagagtaacaaatctgttcccacccaaccttaggatttc |
13614866 |
T |
|
| Q |
201 |
taagcagtgtaaccacccaatagcatcagggatttgaagaagattgcagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaatgaaggcaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13614865 |
taagcagtgtaaccacccaatagcatcagggatttgaagaagattgcagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaatgaaggcaac |
13614766 |
T |
|
| Q |
301 |
aataaaccaattgaatcttctcgctttcgaaaaattgaaaatccaaagtgacgctttagaactttgtg |
368 |
Q |
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| T |
13614765 |
aataaaccaattgaatcttctcgctttcgaaaaattgaaaatccaaagtgacgctttagaactttgtg |
13614698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 91 - 367
Target Start/End: Complemental strand, 31247205 - 31246929
Alignment:
| Q |
91 |
aaatatttcagttgcttacagtgattcaagttcaaatttctaagtttggaaagttcttctatactaggcggtagagtaacaaatctgttcccacccaacc |
190 |
Q |
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||||||||||| || ||||| || | ||||||||| | |||||||||||||||||| | || |||| |||||||||||||| |||| || |||| |
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| T |
31247205 |
aaatatttcagctgtttacaatgctccaagttcaactgtctaagtttggaaagttccttgatgctagaaggtagagtaacaaaattgtttcctcccacat |
31247106 |
T |
|
| Q |
191 |
ataggaattctaagcagtgtaaccacccaatagcatcagggatttgaagaagattgcagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaa |
290 |
Q |
| |
|
||| | ||||||||| |||| || ||||| |||| ||||||||||| ||||||||||||||||| ||||||| |||||| | |||| | | |||||| |
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| T |
31247105 |
ttagaatttctaagcaatgtagccttccaattgcattagggatttgaaaaagattgcagaaacttaggtcaagatattgcagacatgacagacaagacaa |
31247006 |
T |
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| Q |
291 |
tgaaggcaacaataaaccaattgaatcttctcgctttcgaaaaattgaaaatccaaagtgacgctttagaactttgt |
367 |
Q |
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| T |
31247005 |
cgaaggcaacaataaaccaaccgaatcttcgcgttttcgaaaaaaagaaaatggaaagtgcggctttagaactttgt |
31246929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 31212788 - 31212621
Alignment:
| Q |
97 |
ttcagttgcttacagtgattcaagttcaaatttctaagtttggaaagttcttctatactaggcggtagagtaacaaatctgttcccacccaaccatagga |
196 |
Q |
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||||| ||||||||||| | ||||||||| | ||||||||||||||||| || || |||| ||||| || ||||| ||||||| || ||| ||| | |
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| T |
31212788 |
ttcagctgcttacagtgctccaagttcaattctctaagtttggaaagttatttcatgctagaaggtagtgtcacaaaattgttcccccctaactttagca |
31212689 |
T |
|
| Q |
197 |
attctaagcagtgtaaccacccaatagcatcagggatttgaagaagattgcagaaacttatgtcaaga |
264 |
Q |
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||||||||| || ||| ||||||| |||| ||||| ||||||||||||||||||||||| ||||||| |
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| T |
31212688 |
tttctaagcaatgcaacaacccaattgcattagggacttgaagaagattgcagaaacttaggtcaaga |
31212621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31304397 - 31304296
Alignment:
| Q |
1 |
attatactggggcaatcaaaaatatataatc-cagaatagtcaaggatatcttctattattggcaaagcagttatcgatgggagttccggtaaatatttc |
99 |
Q |
| |
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|||| ||||||||| |||||||||||||||| ||||| || ||| | ||||||||||||| ||||||||||||||||||||||| |||||||||| | |
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| T |
31304397 |
attaaactggggcagtcaaaaatatataatcgcagaaaagaaccggaaa-cttctattattggaaaagcagttatcgatgggagttctggtaaatattac |
31304299 |
T |
|
| Q |
100 |
agt |
102 |
Q |
| |
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||| |
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|
| T |
31304298 |
agt |
31304296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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