View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_36 (Length: 380)
Name: NF16515_low_36
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 178 - 366
Target Start/End: Original strand, 3810982 - 3811170
Alignment:
| Q |
178 |
gaatgtggaacataacaggtacccttaaaaagaaaataaagacaataaattaaacgattaaccacaaattcattactcttaaaagggtttgttatcggtt |
277 |
Q |
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| T |
3810982 |
gaatgtggaacataacaggtacccttaaaaagaaaataaaaacaataaattaaacgattaaccacaaattcattactcttaaaagggtttgttatcggtt |
3811081 |
T |
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| Q |
278 |
gaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttcagcacatgcataacctcacgcttcacag |
366 |
Q |
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| T |
3811082 |
gaagttatcaatatccatgaaaattacattaatgagctatattccattgaaacacatcttcagcacatgcataacctcacgcttcacag |
3811170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 3810817 - 3810916
Alignment:
| Q |
13 |
aggatttaatccttgctactttcattattaatgatattgttttcaccttnnnnnnnttgcagaagtgttactccaatttgatttatgcgcttcaagaatc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3810817 |
aggatttaatccttgctactttcattattaatgatattgttttcaccttaaaaaaattgcagaagtgttactccaatttgatttatacgcttcaagaatc |
3810916 |
T |
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