View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_40 (Length: 359)
Name: NF16515_low_40
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 344
Target Start/End: Complemental strand, 31216939 - 31216617
Alignment:
| Q |
20 |
ataaagagtataaaccattggttgatgagaacgtgcatggcatgataggaaacgacaacaaccaaattttgttggttagtacatcctagtcatcacaaca |
119 |
Q |
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| T |
31216939 |
ataaagagtataaaccattggttgatgagaacgtgcatggcatgataggaaacgacaacaaccaaattttgttggttagtacatcctagtcatcacaaca |
31216840 |
T |
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| Q |
120 |
agatacgtgttgcttaacttatgggccacattattgaatatatggatcaatgaacagaaacaaaatcagggtacatctcacatggttatgcccccttgcc |
219 |
Q |
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| T |
31216839 |
agatacgtgttacttaacttatgggccacattattgaatatatggatcaatgaacagaaacaaaatcagggtacatctcacatggttatgcccccttgcc |
31216740 |
T |
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| Q |
220 |
ctttggagatataatagatagatatagattcatttgttcatctcttcaaccgtgggcatggccgttggattttctcaatttaattacaattacaataaga |
319 |
Q |
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| T |
31216739 |
ctttggagatataatagatag--atagattcatttgttcatctcttcaaccgtgggcatggccgttggattttttcaatttaattacaattacaataaga |
31216642 |
T |
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| Q |
320 |
atgtcggttgaataatgcacatctt |
344 |
Q |
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||||||||||||||||||||||||| |
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| T |
31216641 |
atgtcggttgaataatgcacatctt |
31216617 |
T |
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