View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_low_42 (Length: 348)

Name: NF16515_low_42
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_low_42
NF16515_low_42
[»] chr4 (3 HSPs)
chr4 (18-254)||(13781945-13782181)
chr4 (265-338)||(13781826-13781899)
chr4 (29-100)||(35750820-35750891)
[»] chr5 (3 HSPs)
chr5 (69-131)||(12717636-12717698)
chr5 (69-131)||(12778860-12778922)
chr5 (20-149)||(14823684-14823815)
[»] chr2 (2 HSPs)
chr2 (79-150)||(10244771-10244842)
chr2 (150-211)||(10244885-10244946)
[»] chr8 (1 HSPs)
chr8 (289-337)||(5296513-5296561)
[»] chr1 (1 HSPs)
chr1 (30-107)||(38679053-38679132)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 13782181 - 13781945
Alignment:
Q  18 tctttgtcgctgaataaacttcacttcaaagttggaacgaaaagctaactcaaataatatgagaaacaataatagaaaattcagaagttctaggatgact 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13782181 tctttgtcgctgaataaacttcacctcaaagttggaacgaaaagttaactcaaataatatgagaaacaataatagaaaattcagaagttctacgatgact 13782082  T
Q  118 agctgttagagatgccacaaatgtctgggaatctgattgcttcaagaagagcaaaaactttgccttcaagtaccgacatataacccttcctccattgcgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| |    
T  13782081 agctgttagagatgccacaaatgtctgggaatctgattgcttcaagaagagcaaaaagttcgccttcaagtaccgacatatgacccttcctccattgcac 13781982  T
Q  218 ttgagctgccacaaatcggccatctgaatcacaaaca 254  Q
    |||||||||||||||||||||||||||||||||||||    
T  13781981 ttgagctgccacaaatcggccatctgaatcacaaaca 13781945  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 13781899 - 13781826
Alignment:
Q  265 cacattgcaattcaatgactcttatgttgttgttttagttttcgctcatgtttttctgtgggaggggtcctttg 338  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  13781899 cacattgcaattcaatgactcttatgttgttgttttagatttcgctcatgtttttttgtgggaggggtcctttg 13781826  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 35750891 - 35750820
Alignment:
Q  29 gaataaacttcacttcaaagttggaacgaaaagctaactcaaataatatgagaaacaataatagaaaattca 100  Q
    ||||||||||||| ||||||||| || | ||| |||||||| | |  | |||||||||||||||||||||||    
T  35750891 gaataaacttcacctcaaagttgaaatgtaaaactaactcagaaataacgagaaacaataatagaaaattca 35750820  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 12717698 - 12717636
Alignment:
Q  69 aaataatatgagaaacaataatagaaaattcagaagttctaggatgactagctgttagagatg 131  Q
    |||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||    
T  12717698 aaataatatgagaaacaataatagaaaattcaaaagttccatgatgactagctgttagagatg 12717636  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 12778922 - 12778860
Alignment:
Q  69 aaataatatgagaaacaataatagaaaattcagaagttctaggatgactagctgttagagatg 131  Q
    |||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||    
T  12778922 aaataatatgagaaacaataatagaaaattcaaaagttccatgatgactagctgttagagatg 12778860  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 14823684 - 14823815
Alignment:
Q  20 tttgtcgctgaataaacttcacttcaaagttggaacgaaaagctaactca--aataatatgagaaacaataatagaaaattcagaagttctaggatgact 117  Q
    |||||||| ||||||||||||  | |||| ||||| | ||| ||||||||  ||||||||||||||||||||| |||||||||||||||  | |||||||    
T  14823684 tttgtcgccgaataaacttcatcttaaagatggaatgtaaaactaactcataaataatatgagaaacaataattgaaaattcagaagtttcacgatgact 14823783  T
Q  118 agctgttagagatgccacaaatgtctgggaat 149  Q
     |  |||||||||||||| |  ||||||||||    
T  14823784 tgtcgttagagatgccaccagcgtctgggaat 14823815  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 10244771 - 10244842
Alignment:
Q  79 agaaacaataatagaaaattcagaagttctaggatgactagctgttagagatgccacaaatgtctgggaatc 150  Q
    ||||||||||||||||||||| |||| || | |||||||  |||||||||||||||| || || ||||||||    
T  10244771 agaaacaataatagaaaattctgaagctccatgatgactgactgttagagatgccaccaacgtttgggaatc 10244842  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 10244885 - 10244946
Alignment:
Q  150 ctgattgcttcaagaagagcaaaaactttgccttcaagtaccgacatataacccttcctcca 211  Q
    ||||||||||||||||||||  || ||| ||||||||| |||||||||  ||| ||||||||    
T  10244885 ctgattgcttcaagaagagctgaagcttcgccttcaagcaccgacataagaccattcctcca 10244946  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 5296513 - 5296561
Alignment:
Q  289 tgttgttgttttagttttcgctcatgtttttctgtgggaggggtccttt 337  Q
    ||||||||||||||||||||||  ||||||||||| ||| || ||||||    
T  5296513 tgttgttgttttagttttcgctattgtttttctgtaggatggatccttt 5296561  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 38679053 - 38679132
Alignment:
Q  30 aataaacttcacttcaaagttggaacgaaaagctaactca--aataatatgagaaacaataatagaaaattcagaagttc 107  Q
    |||||||||||| |  ||||||||| | ||||||| || |  |||||||| ||||||||||| | |||||||||||||||    
T  38679053 aataaacttcaccttgaagttggaatgtaaagctaccttataaataatattagaaacaataacaaaaaattcagaagttc 38679132  T

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