View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_44 (Length: 343)
Name: NF16515_low_44
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 51756892 - 51756745
Alignment:
| Q |
18 |
acaattagtatataccaacagtaaatttcatccgtcagctggtggtgttacaagttaatttgttatattcggcaatagacaagttattgagtctgaaaca |
117 |
Q |
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| T |
51756892 |
acaattagtat-taccaacagtaaatttcatccgtcagctggtggtgttacaagtt----tgttatattcggcaatagacaaattattgagtctgaaaca |
51756798 |
T |
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| Q |
118 |
gacattttagttagcatcgtccatttgatggaaccatgtgcgactgtgaccac |
170 |
Q |
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| T |
51756797 |
gacattttagttagcatcgtccatttgatggaaccatgtgcgactgtgaccac |
51756745 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 339
Target Start/End: Complemental strand, 51756647 - 51756561
Alignment:
| Q |
257 |
aatgaacacatctatatctcctggacatttgagattatcagtggtttatcta----ctacatagcacaacacaatttcatctcactc |
339 |
Q |
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| T |
51756647 |
aatgaacacatctatatctcctgaacatttgagatattcagtggtttatctattacgtacatagcacaacacaatttcatttcactc |
51756561 |
T |
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