View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_45 (Length: 336)
Name: NF16515_low_45
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 325
Target Start/End: Original strand, 51368218 - 51368533
Alignment:
| Q |
10 |
cagagattggtgcatgacaaaattgcagaacagaagcacataaagggcaaatcaaaatataacaagagaacagttggacaaattggatcaaaatggtaat |
109 |
Q |
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| T |
51368218 |
cagagattggtgcatgacaaaattgcagaacagaagcacataaagggcaaatcaaaatataacaagagaacagttggacagattagatcaatatggtaat |
51368317 |
T |
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| Q |
110 |
agaaaagtcaaacacaattgacatatatactatttccaaagcataaatgtcaaaatttgtagaaataattaacagtatcagcaccacaattctcatacaa |
209 |
Q |
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| T |
51368318 |
agaaaagtcaaacacaattgacatatatactatttccaaagcataaatatcaaaatttgtagaaataattaacagtatcagcaccacaattctcatacaa |
51368417 |
T |
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| Q |
210 |
agctacttaaaatggaaaccctnnnnnnnttataaaccattaacttcaatcaatcaatcataaattatgtcaactgaaacataaaattaaacaactttac |
309 |
Q |
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| T |
51368418 |
agcttcttaaaatggaaaccctaaaaaaattataaaccattaacttcaatcaatcaatcataaattatgtcaactgaaacataaaattaaacaactttac |
51368517 |
T |
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| Q |
310 |
acttatggttccttct |
325 |
Q |
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| T |
51368518 |
acttatggttccttct |
51368533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 52237048 - 52237122
Alignment:
| Q |
156 |
atgtcaaaatttgtagaaataattaacagtatcagcaccacaattctcatacaaagctacttaaaatggaaaccc |
230 |
Q |
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| T |
52237048 |
atgtcaaaatttgtagaagtaattaacagtattagcaacactattctcatacaaagctacttaaaatggaaaccc |
52237122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 51542177 - 51542100
Alignment:
| Q |
11 |
agagattggtgcatgacaaaattgcagaacagaagcacataaagggcaaatcaaaatataacaagagaacagttggacaaatt |
93 |
Q |
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|||||||| | ||||||||||||| ||||||| ||||||||||||||||| || |||||||||||||| ||||| ||||| |
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| T |
51542177 |
agagattgttacatgacaaaattgaagaacag---cacataaagggcaaatctaa--ataacaagagaacaattggaaaaatt |
51542100 |
T |
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