View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_49 (Length: 317)
Name: NF16515_low_49
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 16461838 - 16462138
Alignment:
| Q |
1 |
tgggactcacactgcatcaacagcagctggtgtcattgttaacaatgctagttactatggtttagcaaaaggaacagcaagaggtggttcaccttctgct |
100 |
Q |
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| T |
16461838 |
tgggactcacactgcatcaacagcagctggtgtcattgttaacaatgctagttactatggtttagcaaaaggaacagcaagaggtggttcaccttctgct |
16461937 |
T |
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| Q |
101 |
aggattgctgcctataaagcatgctcaggagaaggttgctccggtggcactctattgaaggctattgatgatgctatcaaggatggagtagatataatct |
200 |
Q |
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| T |
16461938 |
aggattgctgcctataaagcatgctcaggagaaggttgctccggtggcactctattgaaggctattgatgatgctatcaaggatggagtagatataatct |
16462037 |
T |
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| Q |
201 |
caatctctattggatttagctcagaatttctatcagaatatttgagtgatccaatagctattggagcatttcatgcagaacaaaggggtgtcatggttgt |
300 |
Q |
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| T |
16462038 |
caatctctattggatttagctcagaatttctatcagaatatttgagtgatccaatagctattggagcatttcatgcagaacaaaggggtgtcatggttgt |
16462137 |
T |
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| Q |
301 |
g |
301 |
Q |
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| T |
16462138 |
g |
16462138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 5 - 301
Target Start/End: Original strand, 16491748 - 16492044
Alignment:
| Q |
5 |
actcacactgcatcaacagcagctggtgtcattgttaacaatgctagttactatggtttagcaaaaggaacagcaagaggtggttcaccttctgctagga |
104 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16491748 |
actcacactgcatcaacagcagctggtgtcaatgttaataatgcaaattattatggtttagcaaaaggaacagcaagaggtggttcaccttcaactagga |
16491847 |
T |
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| Q |
105 |
ttgctgcctataaagcatgctcaggagaaggttgctccggtggcactctattgaaggctattgatgatgctatcaaggatggagtagatataatctcaat |
204 |
Q |
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| T |
16491848 |
ttgccgcctataaaacatgttcagaagaaggttgttcaggttccaccatactaaaggctatggatgatgctatcaaggatggagtagatataatctcaat |
16491947 |
T |
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| Q |
205 |
ctctattggatttagctcagaatttctatcagaatatttgagtgatccaatagctattggagcatttcatgcagaacaaaggggtgtcatggttgtg |
301 |
Q |
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| T |
16491948 |
atctattggacttagctcactgatgcaatcagattatttgaatgatccaatagccattggagcatttcatgccgaacaaaggggggtcacggttgtg |
16492044 |
T |
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