View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_5 (Length: 643)
Name: NF16515_low_5
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 15 - 627
Target Start/End: Complemental strand, 43674407 - 43673795
Alignment:
| Q |
15 |
aacagaagtgagttgtagcgccgccacattaaatgtttgtcgtattctaatattttacgtcagtgtcacgagttgtagtgccaccataatcaatgtttgt |
114 |
Q |
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| T |
43674407 |
aacagaagtgagttgtagcgccgccacattaaatgtttgtcgtattctaatattttacgtcagtgtcacgagttgtagtgccaccataatcaatgtttgt |
43674308 |
T |
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| Q |
115 |
tgtattccaatgtgccaacataaacaaaaggtttgagccagttacaaatgttgtttgcttctcaagagattcactagaacagaagccatctatcgcacca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43674307 |
tgtattccaatgtgccaacataaacaaaaggtttgagccagttacaaatgttgtttgcttctcaagagattcactagaacagaagccatctatcgcacca |
43674208 |
T |
|
| Q |
215 |
gaccatgtgttactctccaccactcgcatcaaacctaggtgattctaggcaactgaagctcaaatttggcgttagatatgatgatggacccatgtggnnn |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43674207 |
gaccatgtgttactctccaccactcgcatcaaacctaggtgattctaggcaactgaagctcaaatttggcgttagatatgatgatggacccatgtggaaa |
43674108 |
T |
|
| Q |
315 |
nnnncaaacccagtgattggattttcaaagaaaatgtgggttacacttaaaaccaccttattggagaagacaaattaatgaaaaatgttgttaaaaagga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43674107 |
aaaacaaacccagtgattggattttcaaagaaaatgtgggttacacttaaaaccaccttattggagaagacaaattaatgaaaaatgttgttaaaaagga |
43674008 |
T |
|
| Q |
415 |
aatactgcctaccatgccaaattcctcggcatcccaactgcagagaacgattgtcctccttggcttccaccctgaatgcagtagaatagagtatcgccga |
514 |
Q |
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| T |
43674007 |
aatactgcctaccatgccaaattcctcggcatcccaactgcagagaacgattgtcctccttggcttccaccctgaatgcagtagaatagagtatcgacga |
43673908 |
T |
|
| Q |
515 |
gcaatgtcaagtagggcagctgtcccactgcttgggtcaacagcaccataagtccatgcatctctatggttcccaagaagaacatggcgatcaggttctt |
614 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43673907 |
gcaatgtcaagtagggcagctgtcccactgcttggatcaacagcaccataagtccatgcatctctatggttcccaagaagaacatggcgatcaggttctt |
43673808 |
T |
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| Q |
615 |
ctgatccttttat |
627 |
Q |
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| T |
43673807 |
ctgatccttttat |
43673795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 425 - 627
Target Start/End: Original strand, 43400572 - 43400766
Alignment:
| Q |
425 |
accatgccaaattcctcggcatcccaactgcagagaacgattgtcctccttggcttccaccctgaatgcagtagaatagagtatcgccgagcaatgtcaa |
524 |
Q |
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||||||||||||| ||| |||||||||||| |||||| ||||||||||| |||||||||||||| || || |||| || |||||| ||||| |
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| T |
43400572 |
accatgccaaatttctctacatcccaactgcggagaacaattgtcctcctctgcttccaccctgaacacaataaaatattgt-----cgagcatggtcaa |
43400666 |
T |
|
| Q |
525 |
gtagggcagctgtcccactgcttgggtcaacagcaccataagtccatgcatctctatggttcccaagaagaacatggcgatcaggttcttctgatccttt |
624 |
Q |
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||||| ||||||||| ||||| || |||| ||| | | || ||||||| ||||||||||||||| ||||| |||| ||||||||||||||||||||| |
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| T |
43400667 |
gtaggacagctgtcctactgccgggatcaatagcgc---atgttcatgcatttctatggttcccaagcagaacttggcaatcaggttcttctgatccttt |
43400763 |
T |
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