View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_50 (Length: 316)
Name: NF16515_low_50
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_50 |
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| [»] scaffold0169 (2 HSPs) |
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Alignment Details
Target: scaffold0169 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 52 - 308
Target Start/End: Original strand, 23838 - 24098
Alignment:
| Q |
52 |
cacccatatactgtgtattgtattgatagatagtgaattatttggataggtattggaccctgaatcatataaaaggaatgttcatatattaggattaacc |
151 |
Q |
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| T |
23838 |
cacccatatactgtggattgtattgacagatagtgaattatttggatagatattggaccatgaatcatataaaaggaatgttcatatattaggattaacc |
23937 |
T |
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| Q |
152 |
acaaatattaaatcatgaatatcatgaaggaaatttgttcttgaaacatgggaggcataaaaacttgattcctat----ccagagatgcatatttatcat |
247 |
Q |
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| T |
23938 |
acaaatattaaatcatgaatatcatgaaggaaatttgttcttgaaacatgggaggcataaaaacttgattcctatattagaagagatgcatatttatcat |
24037 |
T |
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| Q |
248 |
aatatgacataaatttgaatttgaaatgatcaagattcatattgaatattctgcctttgct |
308 |
Q |
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| T |
24038 |
aatatgacataaatttgaatttgaaatgatcaagattcataatgaatattctgccattgct |
24098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 23775 - 23815
Alignment:
| Q |
65 |
tgtattgtattgatagatagtgaattatttggataggtatt |
105 |
Q |
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| T |
23775 |
tgtattgtattgatagatagtgaattatttggataggtatt |
23815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 51 - 308
Target Start/End: Original strand, 772025 - 772286
Alignment:
| Q |
51 |
tcacccatatactgtgtattgtattgatagatagtgaattatttggataggtattggaccctgaatcatataaaaggaatgttcatatattaggattaac |
150 |
Q |
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| T |
772025 |
tcacccatataatgtggattgtattgacagatagtgaattatttggatagatattgaaccatgaatcatataaaaggaatgttcgtatattaggattaac |
772124 |
T |
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| Q |
151 |
cacaaatattaaatcatgaatatcatgaaggaaatttgttcttgaaacatgggaggcataaaaacttgattcctat----ccagagatgcatatttatca |
246 |
Q |
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| T |
772125 |
cacaaatattaaatcatgaatatcatgaaggaaatttgttcttgaaacatgggaggcataaaaacttgattcctatattagaagagatgcatatttatca |
772224 |
T |
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| Q |
247 |
taatatgacataaatttgaatttgaaatgatcaagattcatattgaatattctgcctttgct |
308 |
Q |
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| T |
772225 |
taatatgacataaatttgaatttgaaatgatcaagattcataatgaatattctgccattgct |
772286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 771963 - 772003
Alignment:
| Q |
65 |
tgtattgtattgatagatagtgaattatttggataggtatt |
105 |
Q |
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| T |
771963 |
tgtattgtattgatagatagtgaattatttggataggtatt |
772003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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