View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_52 (Length: 312)
Name: NF16515_low_52
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_52 |
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| [»] scaffold0054 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 34 - 297
Target Start/End: Original strand, 24415238 - 24415501
Alignment:
| Q |
34 |
tcataggctagtaccaaaatgaaaacgggaaatgcatcaaaaataaataagtataataatactaccttggaagatgaaaaaaggctcataataagaaagt |
133 |
Q |
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| T |
24415238 |
tcataggctagtaccaaaatgataacgggaaatgcatcaaaaataaataagtataataatactaccttggaagatgaaaaaagggtcataataagaaagt |
24415337 |
T |
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| Q |
134 |
gacagttttagttttggtttgtttccaatttactattttgcttttagatatcatggtttaccaatctattatcgattctcacctctactgttcttcttat |
233 |
Q |
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| T |
24415338 |
gacagttttagttttggtttgtttccaatttactattttgcttttacatatcatggtttaccaatctattatcgattctcacctctattgttcttcttat |
24415437 |
T |
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| Q |
234 |
gacgaatataatctaatcctcatagacaaatttggtactagcgtgtgatttctaccagttttct |
297 |
Q |
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| T |
24415438 |
gaagaatataatctaatcctcatagacaaatttggtactagcgcgcgatttctaccagttttct |
24415501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 32958346 - 32958280
Alignment:
| Q |
222 |
tgttcttcttatgacgaatataatctaatcctcatagacaaatttggtactagcgtgtgatttctac |
288 |
Q |
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| T |
32958346 |
tgttcttcttacgacgaagataatctaagccccattgacaaatttggtactaacgtgtgatttctac |
32958280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 42830 - 42932
Alignment:
| Q |
195 |
caatctattatcgattctcacctctactgttcttcttatgacgaatataatctaatcctcatagacaaatttggtactagcgtgtgatttctaccagttt |
294 |
Q |
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| T |
42830 |
caatctattatcaattctcactgctacttttcttcttatgacgaatataatctaatccacatagacaaatttggtattagcgtgtgatttctaccagttt |
42929 |
T |
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| Q |
295 |
tct |
297 |
Q |
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||| |
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| T |
42930 |
tct |
42932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 42480 - 42546
Alignment:
| Q |
35 |
cataggctagtaccaaaatgaaaacgggaaatgcatcaaaaataaataagtataataatactaccttg |
102 |
Q |
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| T |
42480 |
cataggctagtaccaaaatgaaaacgggaaatgcat-aaaaataaataagtataatactactaccttg |
42546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 38163 - 38206
Alignment:
| Q |
124 |
ataagaaagtgacagttttagttttggtttgtttccaatttact |
167 |
Q |
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| T |
38163 |
ataagaaagtgacagttttaatttgtgtttgtttccaatttact |
38206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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