View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_53 (Length: 310)
Name: NF16515_low_53
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 69 - 299
Target Start/End: Original strand, 39828888 - 39829117
Alignment:
| Q |
69 |
ggactatcctcccg-cactaggtgtactagagaattaataaaaattgttgtattgaagtctcatattgttgcaattttcgagttgttggatgtaaggtag |
167 |
Q |
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| T |
39828888 |
ggactatcctcccggcattaggtgtactagagaattaataaaaattgttgtattaaagtctcatattgttgcaattttccagttgttggatgtaaggtag |
39828987 |
T |
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| Q |
168 |
gacactataattctttgagatgattttttgaaattgagatctgaatttattcaacatgatatcacactaggttaagaatgacacaatacgaaaaactgta |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39828988 |
gacactataattctttgagatgattttttgaaattgagatctgaatttattcaacatgatatcacactaggttaagaatg--acaatacgaaaaactgta |
39829085 |
T |
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| Q |
268 |
ctcggaaccttcgtttgaacttagaagtgatg |
299 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
39829086 |
ctcggaaccttcgtttgaacttagaagtgatg |
39829117 |
T |
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