View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_54 (Length: 308)
Name: NF16515_low_54
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 9 - 291
Target Start/End: Original strand, 33901483 - 33901765
Alignment:
| Q |
9 |
gagatgaaggttggatgaggtatataggaacttactcccatgggacatctcccacgagcatccagtcgccatccttatcttcataggttggcacatactc |
108 |
Q |
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| T |
33901483 |
gagatggaggttggatgaggtatataggaacttactcccatgggacatctcccacgagcatccagtcgccatccttatcttcataggttggcacatactc |
33901582 |
T |
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| Q |
109 |
agagctgttaagaagatccatcaacttgctctcattcatgaagtctatcattccttgggccccatagttacctataatatataaattaatcactcaaatt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901583 |
agagctgttaagaagatccatcaacttgctctcattcatgaagtctatcattccttgggccccatagttacctataatatataaattaatcactcaaatt |
33901682 |
T |
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| Q |
209 |
aatcatcaatctagaatgtaacaatcccaagatgataataattaatctaactagcacatgcatcctcaactatcgccatgcat |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901683 |
aatcatcaatctagaatgtaacaatcccaagatgataataattaatctaactagcacatgcatcctcaactatcgccatgcat |
33901765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 31338405 - 31338503
Alignment:
| Q |
37 |
aacttactcccatgggacatctcccacgagcatccagtcgccatccttatcttcataggttggcacatactcagagctgttaagaagatccatcaactt |
135 |
Q |
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| T |
31338405 |
aacttactcccatggtacatcaccgacaagcatccagtcgccatctttgtcttcataagttgggacatagtcggagctgttcaatagatccatcaactt |
31338503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 15064645 - 15064582
Alignment:
| Q |
36 |
gaacttactcccatgggacatctcccacgagcatccagtcgccatccttatcttcataggttgg |
99 |
Q |
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| T |
15064645 |
gaacttactcccatggaacatctccaactagcatccagtcaccatccttgtcttcataggttgg |
15064582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 35974572 - 35974684
Alignment:
| Q |
42 |
actcccatgggacatctcccacgagcatccagtcgccatccttatcttcataggttggcacatactcagagctgttaagaagatccatcaacttgctctc |
141 |
Q |
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||||||| || ||||| || || |||||||| || ||||| || |||||||| ||||| ||||| ||||| | ||| | ||| || ||||| ||||| || |
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| T |
35974572 |
actcccaaggaacatcaccaacaagcatccaatcaccatctttgtcttcatatgttggtacataatcagaaccgttcaaaaggtcaatcaatttgctttc |
35974671 |
T |
|
| Q |
142 |
attcatgaagtct |
154 |
Q |
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||||||||||||| |
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| T |
35974672 |
attcatgaagtct |
35974684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 38529649 - 38529522
Alignment:
| Q |
38 |
acttactcccatgggacatctcccacgagcatccagtcgccatccttatcttcataggttggcacatactcagagctgttaagaagatccatcaacttgc |
137 |
Q |
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||||||||||||||||| || || || ||||||||||| |||||||| |||||||||||||| ||||| ||||| |||| | ||||||||||||||| | |
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| T |
38529649 |
acttactcccatgggacgtcaccgacaagcatccagtcaccatccttgtcttcataggttggaacataatcagaattgtttaaaagatccatcaacttac |
38529550 |
T |
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| Q |
138 |
tctcattcatgaagtctatcattccttg |
165 |
Q |
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| T |
38529549 |
tctcattcatgaaatccttcattccttg |
38529522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 28201655 - 28201711
Alignment:
| Q |
37 |
aacttactcccatgggacatctcccacgagcatccagtcgccatccttatcttcata |
93 |
Q |
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| T |
28201655 |
aacttactcccatggtacatctcctacaagcatccagtcaccatctttatcttcata |
28201711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 43392104 - 43392168
Alignment:
| Q |
41 |
tactcccatgggacatctcccacgagcatccagtcgccatccttatcttcataggttggcacata |
105 |
Q |
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||||||||||| ||||| || || |||||||| || |||||||| ||||||||||| ||||||| |
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| T |
43392104 |
tactcccatggaacatcaccaactagcatccaatcaccatccttgtcttcataggtaagcacata |
43392168 |
T |
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