View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16515_low_59 (Length: 298)
Name: NF16515_low_59
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_59 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 28796802 - 28797070
Alignment:
| Q |
17 |
catgttcaacattgttattttctctattcatggatactttggtcaagcagatgtcctaggattgccagatactggaggccaggttttaatccttcctttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28796802 |
catgttcaacattgttattttctctattcatggatactttggtcaagcagatgtcctaggattgccagatactggaggccaggttttaatccttcctttt |
28796901 |
T |
|
| Q |
117 |
taatgattgaatccatgaaaattactagaaaatcaatatttttgttgcctagtttttgtttcctaacaattacccttcaatagggaaattttatgacgta |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28796902 |
caatgattgagtccatgaaaattactagaaaatcaatatttttgttgcctagtttttgtttcctaacaattacccttcaatagggaaattttatgacgta |
28797001 |
T |
|
| Q |
217 |
ccatcgtgacagttggtccaccatagaccagtatttgaaatccgtctaaattccaacgatgattgatga |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28797002 |
ccatcgtgacagttggtccaccatagaccagtatttgaaatccgtctaaattccaacgatgattgatga |
28797070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 28775114 - 28775271
Alignment:
| Q |
17 |
catgttcaacattgttattttctctattcatggatactttggtcaagcagatgtcctaggattgccagatactggaggccaggttttaatccttcctttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28775114 |
catgttcaacattgttattttctctattcatggatactttggtcaagctgatgttctaggattgccagatactggaggccaggttttaatcctccctttt |
28775213 |
T |
|
| Q |
117 |
taatgattgaatccatgaaaattactagaaaatcaatatttttgttgcctagtttttg |
174 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
28775214 |
cactgattgaatccatgaaaattactagaaaatcaaaaattttgttgcctaatttttg |
28775271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 28775325 - 28775422
Alignment:
| Q |
169 |
tttttgtttcctaacaattacccttcaatagggaaattttatgacgtaccatcgtgacagttggtccaccatagaccagtatttgaaatccgtctaaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28775325 |
tttttgtttcctaacaattacccttcaataaggaaattttatgacgtaccatctcgacagttggtccaccatagaccagtatttgaaagccgtctaaa |
28775422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 29120318 - 29120266
Alignment:
| Q |
36 |
ttctctattcatggatactttggtcaagcagatgtcctaggattgccagatac |
88 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| || || ||||||||||| |
|
|
| T |
29120318 |
ttctctattcatggttattttggtcaagcagatgttcttggcttgccagatac |
29120266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University