View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_60 (Length: 298)
Name: NF16515_low_60
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_60 |
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| [»] scaffold0524 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 11804350 - 11804621
Alignment:
| Q |
17 |
atcttggagctctatcaagcagcctcatgccaattcatttacttggagaaatcagaaatttcatttagctgaaacgtttcagaagagagaaaaatcatgt |
116 |
Q |
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| T |
11804350 |
atcttggagctctatcaagcagcctcatgccaattcattaacttggagaaatcagaaatttcatttagctgaaacgtttcagaagagagaaaaatcatgt |
11804449 |
T |
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| Q |
117 |
tccaaggttggatgcaaattaagatggtgtaatgtcacacgaaatactttgcctcccggcttatgttggccgctccaagcgacaagtatttgacttcatc |
216 |
Q |
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| T |
11804450 |
tccaaggttggatgcaaattaaggtggtgtaatgtcacacgaaatattttgcctcccggcttatgttggccgctccaagcgacaagtatttgacttcatc |
11804549 |
T |
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| Q |
217 |
caagaaagagtctggaagaaactgaaaggttggaaaggaaactttcagttatccaagcaatccccacctatg |
288 |
Q |
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| T |
11804550 |
caagaaagaatctggaagaaactgaaaggttggaaaggaaactttcagttatccacgcaatccccacttatg |
11804621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 20780291 - 20780537
Alignment:
| Q |
17 |
atcttggagctctatcaagcagcctcatgccaattcatttacttggagaaatcagaaatttcatttagctgaaacgtttcagaagagagaaaaatcatgt |
116 |
Q |
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| T |
20780291 |
atcttagagctctatcaagcagcctcaggccaactcattaacttggagaaatcagaaatttcatttagccgaaacgttacagaagagagaaaaatcatgt |
20780390 |
T |
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| Q |
117 |
tccaaggttggatgcaaattaagatggtgtaatgtcacacgaaatactt-tgcctcccggcttatgttggccgctccaagcgacaagtatttgacttcat |
215 |
Q |
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| T |
20780391 |
tctaaggttggatgcaaattaaggcggtggaatgtcacacgaaatacttgggcctcccggcttatgttggccgctccaagcaacaagtatttgatttcgt |
20780490 |
T |
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| Q |
216 |
ccaagaaagagtctggaagaaactgaaaggttggaaaggaaactttc |
262 |
Q |
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| T |
20780491 |
ccaagaaagagtctggaagaaactaaaaggatggaaaggaaactttc |
20780537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 28707999 - 28707903
Alignment:
| Q |
59 |
ttggagaaatcagaaatttcatttagctgaaacgtttcagaagagagaaaaatcatgttcc-aaggttggatgcaaattaagatggtgtaatgtcac |
154 |
Q |
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| T |
28707999 |
ttggacaaatcagaaatttcctttagctgaaatgtacctgaagagaagaaaattatgttccaaaagttggatgcaaattaaggttgtggaatgtcac |
28707903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 26888529 - 26888461
Alignment:
| Q |
71 |
gaaatttcatttagctgaaacgtttcagaagagagaaaaatcatgttccaaggttggatgcaaattaag |
139 |
Q |
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| T |
26888529 |
gaaatctcctttagctgaaatgttcttgaagagaaaaaaatcatgttccaaggttggatgtaaattaag |
26888461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 165
Target Start/End: Complemental strand, 32161876 - 32161817
Alignment:
| Q |
106 |
aaaaatcatgttccaaggttggatgcaaattaagatggtgtaatgtcacacgaaatactt |
165 |
Q |
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| T |
32161876 |
aaaaatcatgttccaaagttggatgcaaattaaggtcgtggagtgtcattcgaaatactt |
32161817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 11575 - 11543
Alignment:
| Q |
107 |
aaaatcatgttccaaggttggatgcaaattaag |
139 |
Q |
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| T |
11575 |
aaaatcttgttccaaggttggatgcaaattaag |
11543 |
T |
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