View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_low_61 (Length: 294)

Name: NF16515_low_61
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_low_61
NF16515_low_61
[»] chr7 (1 HSPs)
chr7 (36-275)||(43070565-43070803)
[»] chr2 (4 HSPs)
chr2 (36-275)||(18354490-18354728)
chr2 (37-275)||(23348163-23348400)
chr2 (36-266)||(12742389-12742618)
chr2 (36-199)||(10328285-10328447)
[»] chr5 (4 HSPs)
chr5 (36-275)||(9044504-9044741)
chr5 (36-275)||(30441728-30441966)
chr5 (36-167)||(7472775-7472905)
chr5 (194-275)||(7472691-7472772)
[»] chr3 (4 HSPs)
chr3 (36-199)||(19881369-19881531)
chr3 (36-199)||(53972545-53972707)
chr3 (174-262)||(50829466-50829555)
chr3 (174-262)||(50846298-50846387)
[»] scaffold0596 (1 HSPs)
scaffold0596 (36-199)||(1353-1515)
[»] chr1 (1 HSPs)
chr1 (115-207)||(21674755-21674846)
[»] chr8 (1 HSPs)
chr8 (36-124)||(33688074-33688159)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 43070803 - 43070565
Alignment:
Q  36 caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt 135  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  43070803 caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt 43070705  T
Q  136 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43070704 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt 43070605  T
Q  236 tcagggtgctgtcatggtgttgttggcagtttagttgttg 275  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  43070604 tcagggtgctgtcatggtgctgttggcagtttagttgttg 43070565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 18354728 - 18354490
Alignment:
Q  36 caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt 135  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  18354728 caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt 18354630  T
Q  136 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18354629 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt 18354530  T
Q  236 tcagggtgctgtcatggtgttgttggcagtttagttgttg 275  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  18354529 tcagggtgctgtcatggtgctgttggcagtttagttgttg 18354490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 37 - 275
Target Start/End: Complemental strand, 23348400 - 23348163
Alignment:
Q  37 aaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattta 136  Q
    ||||||||||||||  ||||| |||||||||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  23348400 aaacacaccaatatgtccattaatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattaaaaatatgattgcgaagtatattta 23348302  T
Q  137 gttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggttt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23348301 gttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggttt 23348202  T
Q  237 cagggtgctgtcatggtgttgttggcagtttagttgttg 275  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  23348201 cagggtgctgtcatggtgctgttggcagtttagttgttg 23348163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 36 - 266
Target Start/End: Original strand, 12742389 - 12742618
Alignment:
Q  36 caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt 135  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  12742389 caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt 12742487  T
Q  136 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12742488 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt 12742587  T
Q  236 tcagggtgctgtcatggtgttgttggcagtt 266  Q
    |||||||| |||||||||| |||||||||||    
T  12742588 tcagggtgttgtcatggtgctgttggcagtt 12742618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 10328447 - 10328285
Alignment:
Q  36 caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt 135  Q
    |||||||||||||||  ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  10328447 caaacacaccaatatgtccattgatgttgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt 10328349  T
Q  136 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10328348 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga 10328285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 36 - 275
Target Start/End: Original strand, 9044504 - 9044741
Alignment:
Q  36 caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt 135  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  9044504 caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt 9044602  T
Q  136 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9044603 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcagg-ttttggtggtt 9044701  T
Q  236 tcagggtgctgtcatggtgttgttggcagtttagttgttg 275  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  9044702 tcagggtgctgtcatggtgctgttggcagtttagttgttg 9044741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 36 - 275
Target Start/End: Complemental strand, 30441966 - 30441728
Alignment:
Q  36 caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt 135  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  30441966 caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt 30441868  T
Q  136 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttctggtggtgctgtgcaggtttttggtggtt 235  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30441867 agttattcaacattccttacgtttaattcctttattttgtgcgggttctgctgtcattttgggagcttttctggtggtgttgtgcaggtttttggtggtt 30441768  T
Q  236 tcagggtgctgtcatggtgttgttggcagtttagttgttg 275  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  30441767 tcagggtgctgtcatggtgttgttggcattttagttgttg 30441728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 7472905 - 7472775
Alignment:
Q  36 caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt 135  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  7472905 caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttccacttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt 7472807  T
Q  136 agttattcaacattccttacgttcaattcctt 167  Q
    ||||||||||||||||||||||||||||||||    
T  7472806 agttattcaacattccttacgttcaattcctt 7472775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 194 - 275
Target Start/End: Complemental strand, 7472772 - 7472691
Alignment:
Q  194 ttgggagcttttctggtggtgctgtgcaggtttttggtggtttcagggtgctgtcatggtgttgttggcagtttagttgttg 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7472772 ttgggagcttttctggtggtgctgtgcaggtttttggtggtttcagggtgctgtcatggtgctgttggcagtttagttgttg 7472691  T

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Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 19881531 - 19881369
Alignment:
Q  36 caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt 135  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  19881531 caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt 19881433  T
Q  136 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga 199  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19881432 agttattcaacatttcttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga 19881369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 53972707 - 53972545
Alignment:
Q  36 caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt 135  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  53972707 caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt 53972609  T
Q  136 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga 199  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  53972608 agttattcaacattccttaagttcaattcatttatcttgcgcgggttctgctgtcattttggga 53972545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 50829555 - 50829466
Alignment:
Q  174 gcgcgggttctgctgtcattttgggagcttttctggtggt-gctgtgcaggtttttggtggtttcagggtgctgtcatggtgttgttggc 262  Q
    |||||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||||||||| || |||| |||||||| |||||||    
T  50829555 gcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttggtggtttcgggctgctatcatggtgctgttggc 50829466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 50846298 - 50846387
Alignment:
Q  174 gcgcgggttctgctgtcattttgggagcttttctggtggt-gctgtgcaggtttttggtggtttcagggtgctgtcatggtgttgttggc 262  Q
    |||||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||||||||| || |||| |||||||| |||||||    
T  50846298 gcgcgggtcccgctgtcattttgggatcttttctggtggttgttgtgcaggtttttggtggtttcgggctgctatcatggtgctgttggc 50846387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 1353 - 1515
Alignment:
Q  36 caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgctaagtatattt 135  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  1353 caaacacaccaatatgtccattgatgctgaccttt-aatgattgtgctttcctcttcgctctgtgtttataaattgaaaatatgattgcgaagtatattt 1451  T
Q  136 agttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttggga 199  Q
    ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||    
T  1452 agttattcaacattccttaagttcaattcctttatcttgcgatggttctgctgtcattttggga 1515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 21674846 - 21674755
Alignment:
Q  115 atatgattgctaagtatatttagttattcaacattccttacgttcaattcctttatcttgcgcgggttctgctgtcattttgggagcttttct 207  Q
    |||| ||||| ||||  ||||| |||||||||||| |||||  | ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21674846 atattattgccaagttgatttatttattcaacatttcttaccct-aattcctttatctggcgcgggttctgctgtcattttgggagcttttct 21674755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 33688159 - 33688074
Alignment:
Q  36 caaacacaccaatattcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtgtttataaattgaaaatatgattgc 124  Q
    |||||||||||||||  | ||||||| |||||||| |||||||||||||||||||| | |  |||||||||||||||||||||||||||    
T  33688159 caaacacaccaatatgtcgattgatgttgaccttt-aatgattgtgctttcctcttcgat--gtgtttataaattgaaaatatgattgc 33688074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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