View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_65 (Length: 287)
Name: NF16515_low_65
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_65 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 6855505 - 6855219
Alignment:
| Q |
1 |
tttagtgatgatatttctctgtggataaatagannnnnnngaactttgcaaattgcgcttcgtggcctgaaaaataagatattgttaatgcttgttttca |
100 |
Q |
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| T |
6855505 |
tttagtgatgatatttctctgtggataaatagatttttttgaactttgcaaattgcgcttcgtggcctgaaaaataatatattgttaatgcttgttttca |
6855406 |
T |
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| Q |
101 |
tgttggtgggaataagtatggtggaaatgtagttatatacagtccgggttgtcaaaacccttgatgggaagcttgtttaccgacaactaggaagagagct |
200 |
Q |
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| T |
6855405 |
tgttggtgggaataagtatggtggaaatgtagttatatacagtccgggttgtcaaaaccctcgatgggaagcttgtttaccgacaactaggaagagagct |
6855306 |
T |
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| Q |
201 |
agtggaccaaaatgcattgttaatggaaagagggttcataaggggggattccatgtttaaggcccacagagtacaagagatcaaagt |
287 |
Q |
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| T |
6855305 |
agtggaccaaaatgcattgttaatggaaagagggttcataaggggggattccatgtttaaggcccacagagtacaagagatcaaagt |
6855219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 24242462 - 24242532
Alignment:
| Q |
169 |
aagcttgtttacc-gacaactaggaagagagctagtggaccaaaatgcattgttaatggaaagagggttca |
238 |
Q |
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| T |
24242462 |
aagcttgtttatcagacaaccaagaagagagctagtggacctaaatgccctgttactggaaagaggattca |
24242532 |
T |
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