View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_68 (Length: 283)
Name: NF16515_low_68
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_68 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 23 - 265
Target Start/End: Original strand, 33879417 - 33879659
Alignment:
| Q |
23 |
gatcatgcatgcagttagttattaggtactctcgttcttccatcccaaagcttgtttgatcattgccattgctttctcgcagattccactcccagcattg |
122 |
Q |
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| T |
33879417 |
gatcatgcatgcagttagttattaggtactctccttcttccatcccaaagcttgtttgatcattgccattgctttctcgcagattccactcccagcattg |
33879516 |
T |
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| Q |
123 |
acttgtacttcaaactccaagtcatgatggaaagtttccaacgaagcaccacactccttaaactttgtatacaaacggcggtaagcactccgtaacgaca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33879517 |
acttgtacttcaaactccaagtcatgatggaaagtttccaacgaagcaccacactccttaaactttgtatacaaacggcggtaagcactccgtaacgaca |
33879616 |
T |
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| Q |
223 |
cctgaaaagattccctaacctcaataaccgtcgaagaattgtc |
265 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33879617 |
cctgaaaagactccctaacctcaataaccgtcgaagaattgtc |
33879659 |
T |
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