View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16515_low_70 (Length: 272)

Name: NF16515_low_70
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16515_low_70
NF16515_low_70
[»] chr2 (6 HSPs)
chr2 (164-258)||(5475924-5476018)
chr2 (79-166)||(5475804-5475891)
chr2 (11-87)||(5475241-5475315)
chr2 (49-142)||(5483523-5483616)
chr2 (162-207)||(5481015-5481060)
chr2 (53-146)||(5480857-5480950)
[»] chr3 (1 HSPs)
chr3 (20-147)||(32026770-32026895)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 5475924 - 5476018
Alignment:
Q  164 atcactgatagtttcacaatacttttttagtcagtattaaacaaggaaacagaaacaaagagacaaataggttctgtagaaaaatataacaaaga 258  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  5475924 atcactgaaagtttcacactacttttttagtcagtattaaacaaagaaacagaaacaaagagacagatatgttctgtagaaaaatataacaaaga 5476018  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 5475804 - 5475891
Alignment:
Q  79 tttattttacagcattaccatgattttgagcctgctaagttcatgtatttaatttagacaatgaacttcagagaatatgcagcacatc 166  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  5475804 tttattttacagcattaccataattttgggcctgctaagttcatgtatttaatttagacaataaacttcagagcagatgcagcacatc 5475891  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 5475241 - 5475315
Alignment:
Q  11 acaagcagaaaaaacaagaagtgtgtgtcaaggagaattcttaaaatagtaaacagtttatgactacatttatttta 87  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  5475241 acaagcagaaaaaacaagaagtgt--gtcaaggagaattcttaaaatagtgaacagtttatgattacatttatttta 5475315  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 5483523 - 5483616
Alignment:
Q  49 tcttaaaatagtaaacagtttatgactacatttattttacagcattaccatgattttgagcctgctaagttcatgtatttaatttagacaatga 142  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||| || ||| |||||| |||| || ||||  ||| ||| |||| ||||||    
T  5483523 tcttaaaataataaacaatttatgacttcatttattttacagcattgccgtgactttgaggctgccaatttcaaatatctaacttagtcaatga 5483616  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 5481015 - 5481060
Alignment:
Q  162 acatcactgatagtttcacaatacttttttagtcagtattaaacaa 207  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||    
T  5481015 acatgactgatagtttcacaatattttttaagtcagtattaaacaa 5481060  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 5480857 - 5480950
Alignment:
Q  53 aaaatagtaaacagtttatgactacatttattttacagcattaccatgattttgagcctgctaagttcatgtatttaatttagacaatgaactt 146  Q
    |||||| ||||||||| ||||||  |||||||||| | |||| || ||| |||||  |||||||  |||  ||||||||||| |||||||||||    
T  5480857 aaaataataaacagttgatgacttgatttattttataacattgccgtgactttgaagctgctaatatcaaatatttaatttaaacaatgaactt 5480950  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 32026895 - 32026770
Alignment:
Q  20 aaaaacaagaagtgtgtgtcaaggagaattcttaaaatagtaaacagtttatgactacatttattttacagcattaccatgattttgagcctgctaagtt 119  Q
    |||||||||||||  |||||||| || ||| |||||||| ||||| ||| ||||||  |||||||||| | ||||  | ||| |||||| |||||||  |    
T  32026895 aaaaacaagaagt--gtgtcaagaaggattgttaaaataataaacggttgatgacttgatttattttataacattgtcgtgactttgaggctgctaatat 32026798  T
Q  120 catgtatttaatttagacaatgaacttc 147  Q
    ||  | |||| |||||||||| ||||||    
T  32026797 caaatgtttagtttagacaattaacttc 32026770  T

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