View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_74 (Length: 259)
Name: NF16515_low_74
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 12 - 174
Target Start/End: Original strand, 2064854 - 2065017
Alignment:
| Q |
12 |
aattaattgattgtctctcaatgtaaaacaccttagtgaaggatcatagaattgagataaa-aagaaatagcccccgcgtgttcccatatgacttgttaa |
110 |
Q |
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| T |
2064854 |
aattaattgatagtctctcaatgtaaaacaccttagtgaaggatcatagcattgagttaaagaagaattagcccccgcgtgttcccatatgacttgttaa |
2064953 |
T |
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| Q |
111 |
cattttataaaacataaacaagttatataatgaaaatgatttgttaacattattgttcatcgta |
174 |
Q |
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| T |
2064954 |
cattttatagaacataaacaagttatataatgaaaatgatttgttaacattattgttcatcgta |
2065017 |
T |
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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 2065409 - 2065470
Alignment:
| Q |
177 |
atactcaataatagtttcaaactcaaatttgtgtgttatatgttaatcataaatttggtatt |
238 |
Q |
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| T |
2065409 |
atactcaataatagtttcaaactcaaatttgagtgttatatgttaatcataaatttggtatt |
2065470 |
T |
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