View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16515_low_78 (Length: 253)
Name: NF16515_low_78
Description: NF16515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16515_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 47328247 - 47328018
Alignment:
| Q |
8 |
ccaagaatataatatcatctactactcaatgtgatcataaaaactttctcaagatccaaatataaaaccatataagatgtctttcctttcatacagttaa |
107 |
Q |
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| T |
47328247 |
ccaagaaaataatatcatctactactcaatgtgatcataaaaactttctcaagatccaaatataaaaccatataagatgtctttcctttcatatagttaa |
47328148 |
T |
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| Q |
108 |
gtgagtaaaatgctttctgaaggatcataatatcatccaaagtagatcttccaggaataaatctactttgattttgagagataacgtacgacatagtaaa |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47328147 |
gtgagtaaaatgttttctgaaggatcataatatcatccaaagtagatcttccaggaataaatctactttgattttgagagataacgtacgacatagtaaa |
47328048 |
T |
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| Q |
208 |
tagtaatacgacgtctttgagccactatct |
237 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
47328047 |
tagtaatacaacgtctttgagccactatct |
47328018 |
T |
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